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SUMF2 (sulfatase modifying factor 2)

Identity

Alias_symbol (synonym)DKFZp566I1024
Other aliaspFGE
HGNC (Hugo) SUMF2
LocusID (NCBI) 25870
Atlas_Id 74372
Location 7p11.2  [Link to chromosome band 7p11]
Location_base_pair Starts at 56064224 and ends at 56080672 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SUMF2 (7p11.2) / RPS2 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUMF2   20415
Cards
Entrez_Gene (NCBI)SUMF2  25870  sulfatase modifying factor 2
AliasespFGE
GeneCards (Weizmann)SUMF2
Ensembl hg19 (Hinxton)ENSG00000129103 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129103 [Gene_View]  chr7:56064224-56080672 [Contig_View]  SUMF2 [Vega]
ICGC DataPortalENSG00000129103
TCGA cBioPortalSUMF2
AceView (NCBI)SUMF2
Genatlas (Paris)SUMF2
WikiGenes25870
SOURCE (Princeton)SUMF2
Genetics Home Reference (NIH)SUMF2
Genomic and cartography
GoldenPath hg38 (UCSC)SUMF2  -     chr7:56064224-56080672 +  7p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUMF2  -     7p11.2   [Description]    (hg19-Feb_2009)
EnsemblSUMF2 - 7p11.2 [CytoView hg19]  SUMF2 - 7p11.2 [CytoView hg38]
Mapping of homologs : NCBISUMF2 [Mapview hg19]  SUMF2 [Mapview hg38]
OMIM607940   
Gene and transcription
Genbank (Entrez)AF075046 AK075477 AK297042 AK297793 AK298605
RefSeq transcript (Entrez)NM_001042468 NM_001042469 NM_001042470 NM_001130069 NM_001130070 NM_001146333 NM_015411
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUMF2
Cluster EST : UnigeneHs.279696 [ NCBI ]
CGAP (NCI)Hs.279696
Alternative Splicing GalleryENSG00000129103
Gene ExpressionSUMF2 [ NCBI-GEO ]   SUMF2 [ EBI - ARRAY_EXPRESS ]   SUMF2 [ SEEK ]   SUMF2 [ MEM ]
Gene Expression Viewer (FireBrowse)SUMF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25870
GTEX Portal (Tissue expression)SUMF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBJ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBJ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBJ7
Splice isoforms : SwissVarQ8NBJ7
PhosPhoSitePlusQ8NBJ7
Domains : Interpro (EBI)CTDL_fold    SUMF_dom   
Domain families : Pfam (Sanger)FGE-sulfatase (PF03781)   
Domain families : Pfam (NCBI)pfam03781   
Conserved Domain (NCBI)SUMF2
DMDM Disease mutations25870
Blocks (Seattle)SUMF2
PDB (SRS)1Y4J   
PDB (PDBSum)1Y4J   
PDB (IMB)1Y4J   
PDB (RSDB)1Y4J   
Structural Biology KnowledgeBase1Y4J   
SCOP (Structural Classification of Proteins)1Y4J   
CATH (Classification of proteins structures)1Y4J   
SuperfamilyQ8NBJ7
Human Protein AtlasENSG00000129103
Peptide AtlasQ8NBJ7
HPRD06400
IPIIPI00334513   IPI00334516   IPI00783919   IPI00942954   IPI00972944   IPI00924891   IPI00925106   IPI01026161   IPI00910862   IPI00927565   IPI00939930   IPI00926529   IPI00334514   IPI00926849   IPI00926177   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBJ7
IntAct (EBI)Q8NBJ7
FunCoupENSG00000129103
BioGRIDSUMF2
STRING (EMBL)SUMF2
ZODIACSUMF2
Ontologies - Pathways
QuickGOQ8NBJ7
Ontology : AmiGOendoplasmic reticulum  endoplasmic reticulum lumen  post-translational protein modification  metal ion binding  
Ontology : EGO-EBIendoplasmic reticulum  endoplasmic reticulum lumen  post-translational protein modification  metal ion binding  
NDEx NetworkSUMF2
Atlas of Cancer Signalling NetworkSUMF2
Wikipedia pathwaysSUMF2
Orthology - Evolution
OrthoDB25870
GeneTree (enSembl)ENSG00000129103
Phylogenetic Trees/Animal Genes : TreeFamSUMF2
HOVERGENQ8NBJ7
HOGENOMQ8NBJ7
Homologs : HomoloGeneSUMF2
Homology/Alignments : Family Browser (UCSC)SUMF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUMF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUMF2
dbVarSUMF2
ClinVarSUMF2
1000_GenomesSUMF2 
Exome Variant ServerSUMF2
ExAC (Exome Aggregation Consortium)SUMF2 (select the gene name)
Genetic variants : HAPMAP25870
Genomic Variants (DGV)SUMF2 [DGVbeta]
DECIPHERSUMF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUMF2 
Mutations
ICGC Data PortalSUMF2 
TCGA Data PortalSUMF2 
Broad Tumor PortalSUMF2
OASIS PortalSUMF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUMF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUMF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUMF2
DgiDB (Drug Gene Interaction Database)SUMF2
DoCM (Curated mutations)SUMF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUMF2 (select a term)
intoGenSUMF2
Cancer3DSUMF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607940   
Orphanet
MedgenSUMF2
Genetic Testing Registry SUMF2
NextProtQ8NBJ7 [Medical]
TSGene25870
GENETestsSUMF2
Target ValidationSUMF2
Huge Navigator SUMF2 [HugePedia]
snp3D : Map Gene to Disease25870
BioCentury BCIQSUMF2
ClinGenSUMF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25870
Chemical/Pharm GKB GenePA134921869
Clinical trialSUMF2
Miscellaneous
canSAR (ICR)SUMF2 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUMF2
EVEXSUMF2
GoPubMedSUMF2
iHOPSUMF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:45 CEST 2017

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