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SUMO1 (small ubiquitin-like modifier 1)

Identity

Other namesDAP1
GMP1
OFC10
PIC1
SENP2
SMT3
SMT3C
SMT3H3
UBL1
HGNC (Hugo) SUMO1
LocusID (NCBI) 7341
Location 2q33.1
Location_base_pair Starts at 203070903 and ends at 203103322 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SUMO1   12502
Cards
Entrez_Gene (NCBI)SUMO1  7341  small ubiquitin-like modifier 1
GeneCards (Weizmann)SUMO1
Ensembl (Hinxton)ENSG00000116030 [Gene_View]  chr2:203070903-203103322 [Contig_View]  SUMO1 [Vega]
ICGC DataPortalENSG00000116030
AceView (NCBI)SUMO1
Genatlas (Paris)SUMO1
WikiGenes7341
SOURCE (Princeton)NM_001005781 NM_001005782 NM_003352
Genomic and cartography
GoldenPath (UCSC)SUMO1  -  2q33.1   chr2:203070903-203103322 -  2q33.1   [Description]    (hg19-Feb_2009)
EnsemblSUMO1 - 2q33.1 [CytoView]
Mapping of homologs : NCBISUMO1 [Mapview]
OMIM601912   613705   
Gene and transcription
Genbank (Entrez)AA401634 AB062294 AI815216 AK311840 BC005899
RefSeq transcript (Entrez)NM_001005781 NM_001005782 NM_003352
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NG_011679 NT_005403 NW_001838863 NW_004929305
Consensus coding sequences : CCDS (NCBI)SUMO1
Cluster EST : UnigeneHs.81424 [ NCBI ]
CGAP (NCI)Hs.81424
Alternative Splicing : Fast-db (Paris)GSHG0018280
Alternative Splicing GalleryENSG00000116030
Gene ExpressionSUMO1 [ NCBI-GEO ]     SUMO1 [ SEEK ]   SUMO1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP63165 (Uniprot)
NextProtP63165  [Medical]
With graphics : InterProP63165
Splice isoforms : SwissVarP63165 (Swissvar)
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Ubiquitin-like    Ubiquitin-rel_dom   
Related proteins : CluSTrP63165
Domain families : Pfam (Sanger)ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00240   
Domain families : Smart (EMBL)UBQ (SM00213)  
DMDM Disease mutations7341
Blocks (Seattle)P63165
PDB (SRS)1A5R    1TGZ    1WYW    1Y8R    1Z5S    2ASQ    2BF8    2G4D    2IO2    2IY0    2IY1    2KQS    2LAS    2PE6    2UYZ    2VRR    3KYC    3KYD    3RZW    3UIP   
PDB (PDBSum)1A5R    1TGZ    1WYW    1Y8R    1Z5S    2ASQ    2BF8    2G4D    2IO2    2IY0    2IY1    2KQS    2LAS    2PE6    2UYZ    2VRR    3KYC    3KYD    3RZW    3UIP   
PDB (IMB)1A5R    1TGZ    1WYW    1Y8R    1Z5S    2ASQ    2BF8    2G4D    2IO2    2IY0    2IY1    2KQS    2LAS    2PE6    2UYZ    2VRR    3KYC    3KYD    3RZW    3UIP   
PDB (RSDB)1A5R    1TGZ    1WYW    1Y8R    1Z5S    2ASQ    2BF8    2G4D    2IO2    2IY0    2IY1    2KQS    2LAS    2PE6    2UYZ    2VRR    3KYC    3KYD    3RZW    3UIP   
Human Protein AtlasENSG00000116030
Peptide AtlasP63165
HPRD03554
IPIIPI00303105   IPI00917683   IPI00916532   IPI00917981   IPI00917832   IPI00917013   IPI00477045   
Protein Interaction databases
DIP (DOE-UCLA)P63165
IntAct (EBI)P63165
FunCoupENSG00000116030
BioGRIDSUMO1
IntegromeDBSUMO1
STRING (EMBL)SUMO1
Ontologies - Pathways
QuickGOP63165
Ontology : AmiGOprotein binding  nucleus  nuclear pore  nucleoplasm  nucleolus  cytoplasm  DNA repair  transcription factor binding  PML body  PML body  nuclear speck  protein sumoylation  protein sumoylation  cytokine-mediated signaling pathway  SUMO ligase activity  dendrite  PML body organization  positive regulation of protein complex assembly  ubiquitin protein ligase binding  nuclear membrane  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  regulation of protein localization  negative regulation of DNA binding  negative regulation of sequence-specific DNA binding transcription factor activity  post-translational protein modification  cellular protein metabolic process  poly(A) RNA binding  synapse  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  palate development  interferon-gamma-mediated signaling pathway  regulation of interferon-gamma-mediated signaling pathway  protein localization to nuclear pore  
Ontology : EGO-EBIprotein binding  nucleus  nuclear pore  nucleoplasm  nucleolus  cytoplasm  DNA repair  transcription factor binding  PML body  PML body  nuclear speck  protein sumoylation  protein sumoylation  cytokine-mediated signaling pathway  SUMO ligase activity  dendrite  PML body organization  positive regulation of protein complex assembly  ubiquitin protein ligase binding  nuclear membrane  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  regulation of protein localization  negative regulation of DNA binding  negative regulation of sequence-specific DNA binding transcription factor activity  post-translational protein modification  cellular protein metabolic process  poly(A) RNA binding  synapse  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  palate development  interferon-gamma-mediated signaling pathway  regulation of interferon-gamma-mediated signaling pathway  protein localization to nuclear pore  
Pathways : BIOCARTARole of Parkin in the Ubiquitin-Proteasomal Pathway [Genes]    Regulation of transcriptional activity by PML [Genes]    SUMOylation as a mechanism to modulate CtBP-dependent gene responses [Genes]    Sumoylation by RanBP2 Regulates Transcriptional Repression [Genes]    Basic Mechanisms of SUMOylation [Genes]   
Pathways : KEGGRNA transport   
Protein Interaction DatabaseSUMO1
Wikipedia pathwaysSUMO1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SUMO1
SNP (GeneSNP Utah)SUMO1
SNP : HGBaseSUMO1
Genetic variants : HAPMAPSUMO1
1000_GenomesSUMO1 
ICGC programENSG00000116030 
CONAN: Copy Number AnalysisSUMO1 
Somatic Mutations in Cancer : COSMICSUMO1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)2:203070903-203103322
Mutations and Diseases : HGMDSUMO1
OMIM601912    613705   
MedgenSUMO1
GENETestsSUMO1
Disease Genetic AssociationSUMO1
Huge Navigator SUMO1 [HugePedia]  SUMO1 [HugeCancerGEM]
Genomic VariantsSUMO1  SUMO1 [DGVbeta]
Exome VariantSUMO1
dbVarSUMO1
ClinVarSUMO1
snp3D : Map Gene to Disease7341
General knowledge
Homologs : HomoloGeneSUMO1
Homology/Alignments : Family Browser (UCSC)SUMO1
Phylogenetic Trees/Animal Genes : TreeFamSUMO1
Chemical/Protein Interactions : CTD7341
Chemical/Pharm GKB GenePA37149
Clinical trialSUMO1
Cancer Resource (Charite)ENSG00000116030
Other databases
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
CoreMineSUMO1
GoPubMedSUMO1
iHOPSUMO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 18:00:03 CET 2014

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