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SUMO4 (small ubiquitin-like modifier 4)

Identity

Alias_namesSMT3H4
IDDM5
SMT3 suppressor of mif two 3 homolog 4 (yeast)
SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)
insulin-dependent diabetes mellitus 5
Alias_symbol (synonym)dJ281H8.4
Other aliasSUMO-4
HGNC (Hugo) SUMO4
LocusID (NCBI) 387082
Atlas_Id 74375
Location 6q25.1  [Link to chromosome band 6q25]
Location_base_pair Starts at 149400359 and ends at 149401046 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUMO4   21181
Cards
Entrez_Gene (NCBI)SUMO4  387082  small ubiquitin-like modifier 4
AliasesIDDM5; SMT3H4; SUMO-4; dJ281H8.4
GeneCards (Weizmann)SUMO4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:149400359-149401046 [Contig_View]  SUMO4 [Vega]
TCGA cBioPortalSUMO4
AceView (NCBI)SUMO4
Genatlas (Paris)SUMO4
WikiGenes387082
SOURCE (Princeton)SUMO4
Genetics Home Reference (NIH)SUMO4
Genomic and cartography
GoldenPath hg38 (UCSC)SUMO4  -     chr6:149400359-149401046 +  6q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUMO4  -     6q25.1   [Description]    (hg19-Feb_2009)
EnsemblSUMO4 - 6q25.1 [CytoView hg19]  SUMO4 - 6q25.1 [CytoView hg38]
Mapping of homologs : NCBISUMO4 [Mapview hg19]  SUMO4 [Mapview hg38]
OMIM600320   608829   
Gene and transcription
Genbank (Entrez)AY340238 BC130305 HQ258040
RefSeq transcript (Entrez)NM_001002255
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUMO4
Cluster EST : UnigeneHs.657168 [ NCBI ]
CGAP (NCI)Hs.657168
Gene ExpressionSUMO4 [ NCBI-GEO ]   SUMO4 [ EBI - ARRAY_EXPRESS ]   SUMO4 [ SEEK ]   SUMO4 [ MEM ]
Gene Expression Viewer (FireBrowse)SUMO4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387082
GTEX Portal (Tissue expression)SUMO4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6EEV6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6EEV6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6EEV6
Splice isoforms : SwissVarQ6EEV6
PhosPhoSitePlusQ6EEV6
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Rad60/SUMO-like_dom    Sumo    Ubiquitin-rel_dom    Ubiquitin_dom   
Domain families : Pfam (Sanger)Rad60-SLD (PF11976)   
Domain families : Pfam (NCBI)pfam11976   
Domain families : Smart (EMBL)UBQ (SM00213)  
Conserved Domain (NCBI)SUMO4
DMDM Disease mutations387082
Blocks (Seattle)SUMO4
SuperfamilyQ6EEV6
Peptide AtlasQ6EEV6
HPRD10584
IPIIPI00434968   
Protein Interaction databases
DIP (DOE-UCLA)Q6EEV6
IntAct (EBI)Q6EEV6
BioGRIDSUMO4
STRING (EMBL)SUMO4
ZODIACSUMO4
Ontologies - Pathways
QuickGOQ6EEV6
Ontology : AmiGOnucleus  protein sumoylation  protein tag  
Ontology : EGO-EBInucleus  protein sumoylation  protein tag  
NDEx NetworkSUMO4
Atlas of Cancer Signalling NetworkSUMO4
Wikipedia pathwaysSUMO4
Orthology - Evolution
OrthoDB387082
Phylogenetic Trees/Animal Genes : TreeFamSUMO4
HOVERGENQ6EEV6
HOGENOMQ6EEV6
Homologs : HomoloGeneSUMO4
Homology/Alignments : Family Browser (UCSC)SUMO4
Gene fusions - Rearrangements
Fusion : QuiverSUMO4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUMO4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUMO4
dbVarSUMO4
ClinVarSUMO4
1000_GenomesSUMO4 
Exome Variant ServerSUMO4
Varsome BrowserSUMO4
Genetic variants : HAPMAP387082
Genomic Variants (DGV)SUMO4 [DGVbeta]
DECIPHERSUMO4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUMO4 
Mutations
ICGC Data PortalSUMO4 
TCGA Data PortalSUMO4 
Broad Tumor PortalSUMO4
OASIS PortalSUMO4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUMO4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUMO4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUMO4
DgiDB (Drug Gene Interaction Database)SUMO4
DoCM (Curated mutations)SUMO4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUMO4 (select a term)
intoGenSUMO4
Cancer3DSUMO4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600320    608829   
Orphanet
DisGeNETSUMO4
MedgenSUMO4
Genetic Testing Registry SUMO4
NextProtQ6EEV6 [Medical]
TSGene387082
GENETestsSUMO4
Target ValidationSUMO4
Huge Navigator SUMO4 [HugePedia]
snp3D : Map Gene to Disease387082
BioCentury BCIQSUMO4
ClinGenSUMO4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387082
Chemical/Pharm GKB GenePA134979206
Clinical trialSUMO4
Miscellaneous
canSAR (ICR)SUMO4 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUMO4
EVEXSUMO4
GoPubMedSUMO4
iHOPSUMO4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:33:43 CEST 2018

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