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SUN5 (Sad1 and UNC84 domain containing 5)

Identity

Alias (NCBI)SPAG4L
SPGF16
TSARG4
dJ726C3.1
HGNC (Hugo) SUN5
HGNC Alias symbdJ726C3.1
TSARG4
HGNC Alias nametestis and spermatogenesis related gene 4
HGNC Previous nameSPAG4L
HGNC Previous namesperm associated antigen 4-like
LocusID (NCBI) 140732
Atlas_Id 74379
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 32983775 and ends at 33004433 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SUN5   16252
Cards
Entrez_Gene (NCBI)SUN5    Sad1 and UNC84 domain containing 5
AliasesSPAG4L; SPGF16; TSARG4; dJ726C3.1
GeneCards (Weizmann)SUN5
Ensembl hg19 (Hinxton)ENSG00000167098 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167098 [Gene_View]  ENSG00000167098 [Sequence]  chr20:32983775-33004433 [Contig_View]  SUN5 [Vega]
ICGC DataPortalENSG00000167098
TCGA cBioPortalSUN5
AceView (NCBI)SUN5
Genatlas (Paris)SUN5
SOURCE (Princeton)SUN5
Genetics Home Reference (NIH)SUN5
Genomic and cartography
GoldenPath hg38 (UCSC)SUN5  -     chr20:32983775-33004433 -  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUN5  -     20q11.21   [Description]    (hg19-Feb_2009)
GoldenPathSUN5 - 20q11.21 [CytoView hg19]  SUN5 - 20q11.21 [CytoView hg38]
ImmunoBaseENSG00000167098
Genome Data Viewer NCBISUN5 [Mapview hg19]  
OMIM613942   617187   
Gene and transcription
Genbank (Entrez)AF401350 AK097733 BC026118 BC029528 GQ891500
RefSeq transcript (Entrez)NM_080675
Consensus coding sequences : CCDS (NCBI)SUN5
Gene ExpressionSUN5 [ NCBI-GEO ]   SUN5 [ EBI - ARRAY_EXPRESS ]   SUN5 [ SEEK ]   SUN5 [ MEM ]
Gene Expression Viewer (FireBrowse)SUN5 [ Firebrowse - Broad ]
GenevisibleExpression of SUN5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140732
GTEX Portal (Tissue expression)SUN5
Human Protein AtlasENSG00000167098-SUN5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TC36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TC36
PhosPhoSitePlusQ8TC36
Domaine pattern : Prosite (Expaxy)SUN (PS51469)   
Domains : Interpro (EBI)Galactose-bd-like_sf    SUN5    SUN_dom   
Domain families : Pfam (Sanger)Sad1_UNC (PF07738)   
Domain families : Pfam (NCBI)pfam07738   
Conserved Domain (NCBI)SUN5
SuperfamilyQ8TC36
AlphaFold pdb e-kbQ8TC36   
Human Protein Atlas [tissue]ENSG00000167098-SUN5 [tissue]
HPRD15422
Protein Interaction databases
DIP (DOE-UCLA)Q8TC36
IntAct (EBI)Q8TC36
BioGRIDSUN5
STRING (EMBL)SUN5
ZODIACSUN5
Ontologies - Pathways
QuickGOQ8TC36
Ontology : AmiGOmolecular_function  protein binding  nuclear envelope  nuclear inner membrane  Golgi apparatus  nuclear envelope organization  spermatogenesis  spermatid development  integral component of membrane  meiotic nuclear membrane microtubule tethering complex  protein-membrane adaptor activity  sperm connecting piece  sperm connecting piece  
Ontology : EGO-EBImolecular_function  protein binding  nuclear envelope  nuclear inner membrane  Golgi apparatus  nuclear envelope organization  spermatogenesis  spermatid development  integral component of membrane  meiotic nuclear membrane microtubule tethering complex  protein-membrane adaptor activity  sperm connecting piece  sperm connecting piece  
NDEx NetworkSUN5
Atlas of Cancer Signalling NetworkSUN5
Wikipedia pathwaysSUN5
Orthology - Evolution
OrthoDB140732
GeneTree (enSembl)ENSG00000167098
Phylogenetic Trees/Animal Genes : TreeFamSUN5
Homologs : HomoloGeneSUN5
Homology/Alignments : Family Browser (UCSC)SUN5
Gene fusions - Rearrangements
Fusion : QuiverSUN5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUN5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUN5
dbVarSUN5
ClinVarSUN5
MonarchSUN5
1000_GenomesSUN5 
Exome Variant ServerSUN5
GNOMAD BrowserENSG00000167098
Varsome BrowserSUN5
ACMGSUN5 variants
VarityQ8TC36
Genomic Variants (DGV)SUN5 [DGVbeta]
DECIPHERSUN5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUN5 
Mutations
ICGC Data PortalSUN5 
TCGA Data PortalSUN5 
Broad Tumor PortalSUN5
OASIS PortalSUN5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUN5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSUN5
Mutations and Diseases : HGMDSUN5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSUN5
DgiDB (Drug Gene Interaction Database)SUN5
DoCM (Curated mutations)SUN5
CIViC (Clinical Interpretations of Variants in Cancer)SUN5
Cancer3DSUN5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613942    617187   
Orphanet
DisGeNETSUN5
MedgenSUN5
Genetic Testing Registry SUN5
NextProtQ8TC36 [Medical]
GENETestsSUN5
Target ValidationSUN5
Huge Navigator SUN5 [HugePedia]
ClinGenSUN5
Clinical trials, drugs, therapy
MyCancerGenomeSUN5
Protein Interactions : CTDSUN5
Pharm GKB GenePA38095
PharosQ8TC36
Clinical trialSUN5
Miscellaneous
canSAR (ICR)SUN5
HarmonizomeSUN5
DataMed IndexSUN5
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSUN5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:35 CEST 2021

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