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SUN5 (Sad1 and UNC84 domain containing 5)

Identity

Alias_namesSPAG4L
sperm associated antigen 4-like
Alias_symbol (synonym)dJ726C3.1
TSARG4
Other alias
HGNC (Hugo) SUN5
LocusID (NCBI) 140732
Atlas_Id 74379
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 31571581 and ends at 31592239 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUN5   16252
Cards
Entrez_Gene (NCBI)SUN5  140732  Sad1 and UNC84 domain containing 5
AliasesSPAG4L; TSARG4; dJ726C3.1
GeneCards (Weizmann)SUN5
Ensembl hg19 (Hinxton)ENSG00000167098 [Gene_View]  chr20:31571581-31592239 [Contig_View]  SUN5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167098 [Gene_View]  chr20:31571581-31592239 [Contig_View]  SUN5 [Vega]
ICGC DataPortalENSG00000167098
TCGA cBioPortalSUN5
AceView (NCBI)SUN5
Genatlas (Paris)SUN5
WikiGenes140732
SOURCE (Princeton)SUN5
Genetics Home Reference (NIH)SUN5
Genomic and cartography
GoldenPath hg19 (UCSC)SUN5  -     chr20:31571581-31592239 -  20q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SUN5  -     20q11.21   [Description]    (hg38-Dec_2013)
EnsemblSUN5 - 20q11.21 [CytoView hg19]  SUN5 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBISUN5 [Mapview hg19]  SUN5 [Mapview hg38]
OMIM613942   
Gene and transcription
Genbank (Entrez)AF401350 AK097733 BC026118 BC029528
RefSeq transcript (Entrez)NM_080675
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)SUN5
Cluster EST : UnigeneHs.375186 [ NCBI ]
CGAP (NCI)Hs.375186
Alternative Splicing GalleryENSG00000167098
Gene ExpressionSUN5 [ NCBI-GEO ]   SUN5 [ EBI - ARRAY_EXPRESS ]   SUN5 [ SEEK ]   SUN5 [ MEM ]
Gene Expression Viewer (FireBrowse)SUN5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140732
GTEX Portal (Tissue expression)SUN5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TC36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TC36
Splice isoforms : SwissVarQ8TC36
PhosPhoSitePlusQ8TC36
Domaine pattern : Prosite (Expaxy)SUN (PS51469)   
Domains : Interpro (EBI)SUN5    SUN_dom   
Domain families : Pfam (Sanger)Sad1_UNC (PF07738)   
Domain families : Pfam (NCBI)pfam07738   
Conserved Domain (NCBI)SUN5
DMDM Disease mutations140732
Blocks (Seattle)SUN5
SuperfamilyQ8TC36
Human Protein AtlasENSG00000167098
Peptide AtlasQ8TC36
HPRD15422
IPIIPI00154657   IPI00514671   IPI00514503   IPI00514274   
Protein Interaction databases
DIP (DOE-UCLA)Q8TC36
IntAct (EBI)Q8TC36
FunCoupENSG00000167098
BioGRIDSUN5
STRING (EMBL)SUN5
ZODIACSUN5
Ontologies - Pathways
QuickGOQ8TC36
Ontology : AmiGOmolecular_function  cellular_component  nuclear inner membrane  spermatogenesis  integral component of membrane  
Ontology : EGO-EBImolecular_function  cellular_component  nuclear inner membrane  spermatogenesis  integral component of membrane  
NDEx NetworkSUN5
Atlas of Cancer Signalling NetworkSUN5
Wikipedia pathwaysSUN5
Orthology - Evolution
OrthoDB140732
GeneTree (enSembl)ENSG00000167098
Phylogenetic Trees/Animal Genes : TreeFamSUN5
HOVERGENQ8TC36
HOGENOMQ8TC36
Homologs : HomoloGeneSUN5
Homology/Alignments : Family Browser (UCSC)SUN5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUN5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUN5
dbVarSUN5
ClinVarSUN5
1000_GenomesSUN5 
Exome Variant ServerSUN5
ExAC (Exome Aggregation Consortium)SUN5 (select the gene name)
Genetic variants : HAPMAP140732
Genomic Variants (DGV)SUN5 [DGVbeta]
DECIPHER (Syndromes)20:31571581-31592239  ENSG00000167098
CONAN: Copy Number AnalysisSUN5 
Mutations
ICGC Data PortalSUN5 
TCGA Data PortalSUN5 
Broad Tumor PortalSUN5
OASIS PortalSUN5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUN5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUN5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUN5
DgiDB (Drug Gene Interaction Database)SUN5
DoCM (Curated mutations)SUN5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUN5 (select a term)
intoGenSUN5
Cancer3DSUN5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613942   
Orphanet
MedgenSUN5
Genetic Testing Registry SUN5
NextProtQ8TC36 [Medical]
TSGene140732
GENETestsSUN5
Huge Navigator SUN5 [HugePedia]
snp3D : Map Gene to Disease140732
BioCentury BCIQSUN5
ClinGenSUN5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140732
Chemical/Pharm GKB GenePA38095
Clinical trialSUN5
Miscellaneous
canSAR (ICR)SUN5 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUN5
EVEXSUN5
GoPubMedSUN5
iHOPSUN5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:07 CET 2017

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