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SUPT20H (SPT20 homolog, SAGA complex component)

Identity

Alias_namesC13orf19
FAM48A
chromosome 13 open reading frame 19
family with sequence similarity 48, member A
suppressor of Ty 20 homolog (S. cerevisiae)
Alias_symbol (synonym)SPT20
bA421P11.4
P38IP
Other aliasC13
FP757
HGNC (Hugo) SUPT20H
LocusID (NCBI) 55578
Atlas_Id 46059
Location 13q13.3  [Link to chromosome band 13q13]
Location_base_pair Starts at 37009314 and ends at 37059713 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARID2 (12q12) / SUPT20H (13q13.3)HTATIP2 (11p15.1) / SUPT20H (13q13.3)RNF38 (9p13.2) / SUPT20H (13q13.3)
SUPT20H (13q13.3) / SUPT20H (13q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUPT20H   20596
Cards
Entrez_Gene (NCBI)SUPT20H  55578  SPT20 homolog, SAGA complex component
AliasesC13; C13orf19; FAM48A; FP757; 
P38IP; SPT20
GeneCards (Weizmann)SUPT20H
Ensembl hg19 (Hinxton)ENSG00000102710 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102710 [Gene_View]  chr13:37009314-37059713 [Contig_View]  SUPT20H [Vega]
ICGC DataPortalENSG00000102710
TCGA cBioPortalSUPT20H
AceView (NCBI)SUPT20H
Genatlas (Paris)SUPT20H
WikiGenes55578
SOURCE (Princeton)SUPT20H
Genetics Home Reference (NIH)SUPT20H
Genomic and cartography
GoldenPath hg38 (UCSC)SUPT20H  -     chr13:37009314-37059713 -  13q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUPT20H  -     13q13.3   [Description]    (hg19-Feb_2009)
EnsemblSUPT20H - 13q13.3 [CytoView hg19]  SUPT20H - 13q13.3 [CytoView hg38]
Mapping of homologs : NCBISUPT20H [Mapview hg19]  SUPT20H [Mapview hg38]
OMIM613417   
Gene and transcription
Genbank (Entrez)AF093250 AF370384 AF445026 AJ130894 AK026091
RefSeq transcript (Entrez)NM_001014286 NM_001278480 NM_001278481 NM_001278482 NM_017569
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUPT20H
Cluster EST : UnigeneHs.435815 [ NCBI ]
CGAP (NCI)Hs.435815
Alternative Splicing GalleryENSG00000102710
Gene ExpressionSUPT20H [ NCBI-GEO ]   SUPT20H [ EBI - ARRAY_EXPRESS ]   SUPT20H [ SEEK ]   SUPT20H [ MEM ]
Gene Expression Viewer (FireBrowse)SUPT20H [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55578
GTEX Portal (Tissue expression)SUPT20H
Human Protein AtlasENSG00000102710-SUPT20H [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEM7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEM7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEM7
Splice isoforms : SwissVarQ8NEM7
PhosPhoSitePlusQ8NEM7
Domains : Interpro (EBI)Spt20   
Domain families : Pfam (Sanger)Spt20 (PF12090)   
Domain families : Pfam (NCBI)pfam12090   
Conserved Domain (NCBI)SUPT20H
DMDM Disease mutations55578
Blocks (Seattle)SUPT20H
SuperfamilyQ8NEM7
Human Protein Atlas [tissue]ENSG00000102710-SUPT20H [tissue]
Peptide AtlasQ8NEM7
HPRD10135
IPIIPI00414255   IPI00180922   IPI01013374   IPI01013775   IPI00103779   IPI00946738   IPI00947535   IPI00947038   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEM7
IntAct (EBI)Q8NEM7
FunCoupENSG00000102710
BioGRIDSUPT20H
STRING (EMBL)SUPT20H
ZODIACSUPT20H
Ontologies - Pathways
QuickGOQ8NEM7
Ontology : AmiGOSAGA complex  fibrillar center  transcription cofactor activity  protein binding  autophagy  gastrulation  SAGA-type complex  regulation of nucleic acid-templated transcription  
Ontology : EGO-EBISAGA complex  fibrillar center  transcription cofactor activity  protein binding  autophagy  gastrulation  SAGA-type complex  regulation of nucleic acid-templated transcription  
NDEx NetworkSUPT20H
Atlas of Cancer Signalling NetworkSUPT20H
Wikipedia pathwaysSUPT20H
Orthology - Evolution
OrthoDB55578
GeneTree (enSembl)ENSG00000102710
Phylogenetic Trees/Animal Genes : TreeFamSUPT20H
HOVERGENQ8NEM7
HOGENOMQ8NEM7
Homologs : HomoloGeneSUPT20H
Homology/Alignments : Family Browser (UCSC)SUPT20H
Gene fusions - Rearrangements
Tumor Fusion PortalSUPT20H
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUPT20H [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUPT20H
dbVarSUPT20H
ClinVarSUPT20H
1000_GenomesSUPT20H 
Exome Variant ServerSUPT20H
ExAC (Exome Aggregation Consortium)ENSG00000102710
GNOMAD BrowserENSG00000102710
Genetic variants : HAPMAP55578
Genomic Variants (DGV)SUPT20H [DGVbeta]
DECIPHERSUPT20H [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUPT20H 
Mutations
ICGC Data PortalSUPT20H 
TCGA Data PortalSUPT20H 
Broad Tumor PortalSUPT20H
OASIS PortalSUPT20H [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSUPT20H
BioMutasearch SUPT20H
DgiDB (Drug Gene Interaction Database)SUPT20H
DoCM (Curated mutations)SUPT20H (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUPT20H (select a term)
intoGenSUPT20H
Cancer3DSUPT20H(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613417   
Orphanet
DisGeNETSUPT20H
MedgenSUPT20H
Genetic Testing Registry SUPT20H
NextProtQ8NEM7 [Medical]
TSGene55578
GENETestsSUPT20H
Target ValidationSUPT20H
Huge Navigator SUPT20H [HugePedia]
snp3D : Map Gene to Disease55578
BioCentury BCIQSUPT20H
ClinGenSUPT20H
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55578
Chemical/Pharm GKB GenePA134985241
Clinical trialSUPT20H
Miscellaneous
canSAR (ICR)SUPT20H (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUPT20H
EVEXSUPT20H
GoPubMedSUPT20H
iHOPSUPT20H
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:37:15 CET 2017

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