Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SUPT20HL1 (SPT20 homolog, SAGA complex component like 1)

Identity

Alias_namesFAM48B1
family with sequence similarity 48, member B1
suppressor of Ty 20 homolog (S. cerevisiae)-like 1
Alias_symbol (synonym)SPT20L
Other alias
HGNC (Hugo) SUPT20HL1
LocusID (NCBI) 100130302
Atlas_Id 74380
Location Xp22.11  [Link to chromosome band Xp22]
Location_base_pair Starts at 24362761 and ends at 24365424 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUPT20HL1   30773
Cards
Entrez_Gene (NCBI)SUPT20HL1  100130302  SPT20 homolog, SAGA complex component like 1
AliasesFAM48B1; SPT20L
GeneCards (Weizmann)SUPT20HL1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:24362761-24365424 [Contig_View]  SUPT20HL1 [Vega]
TCGA cBioPortalSUPT20HL1
AceView (NCBI)SUPT20HL1
Genatlas (Paris)SUPT20HL1
WikiGenes100130302
SOURCE (Princeton)SUPT20HL1
Genetics Home Reference (NIH)SUPT20HL1
Genomic and cartography
GoldenPath hg38 (UCSC)SUPT20HL1  -     chrX:24362761-24365424 +  Xp22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUPT20HL1  -     Xp22.11   [Description]    (hg19-Feb_2009)
EnsemblSUPT20HL1 - Xp22.11 [CytoView hg19]  SUPT20HL1 - Xp22.11 [CytoView hg38]
Mapping of homologs : NCBISUPT20HL1 [Mapview hg19]  SUPT20HL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY736017
RefSeq transcript (Entrez)NM_001136234
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUPT20HL1
Cluster EST : UnigeneHs.717243 [ NCBI ]
CGAP (NCI)Hs.717243
Gene ExpressionSUPT20HL1 [ NCBI-GEO ]   SUPT20HL1 [ EBI - ARRAY_EXPRESS ]   SUPT20HL1 [ SEEK ]   SUPT20HL1 [ MEM ]
Gene Expression Viewer (FireBrowse)SUPT20HL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130302
GTEX Portal (Tissue expression)SUPT20HL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3ZLR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3ZLR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3ZLR7
Splice isoforms : SwissVarQ3ZLR7
PhosPhoSitePlusQ3ZLR7
Domains : Interpro (EBI)Spt20   
Domain families : Pfam (Sanger)Spt20 (PF12090)   
Domain families : Pfam (NCBI)pfam12090   
Conserved Domain (NCBI)SUPT20HL1
DMDM Disease mutations100130302
Blocks (Seattle)SUPT20HL1
SuperfamilyQ3ZLR7
Peptide AtlasQ3ZLR7
IPIIPI00083000   
Protein Interaction databases
DIP (DOE-UCLA)Q3ZLR7
IntAct (EBI)Q3ZLR7
BioGRIDSUPT20HL1
STRING (EMBL)SUPT20HL1
ZODIACSUPT20HL1
Ontologies - Pathways
QuickGOQ3ZLR7
Ontology : AmiGOSAGA complex  transcription cofactor activity  regulation of nucleic acid-templated transcription  
Ontology : EGO-EBISAGA complex  transcription cofactor activity  regulation of nucleic acid-templated transcription  
NDEx NetworkSUPT20HL1
Atlas of Cancer Signalling NetworkSUPT20HL1
Wikipedia pathwaysSUPT20HL1
Orthology - Evolution
OrthoDB100130302
Phylogenetic Trees/Animal Genes : TreeFamSUPT20HL1
HOVERGENQ3ZLR7
HOGENOMQ3ZLR7
Homologs : HomoloGeneSUPT20HL1
Homology/Alignments : Family Browser (UCSC)SUPT20HL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUPT20HL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUPT20HL1
dbVarSUPT20HL1
ClinVarSUPT20HL1
1000_GenomesSUPT20HL1 
Exome Variant ServerSUPT20HL1
ExAC (Exome Aggregation Consortium)SUPT20HL1 (select the gene name)
Genetic variants : HAPMAP100130302
Genomic Variants (DGV)SUPT20HL1 [DGVbeta]
DECIPHERSUPT20HL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUPT20HL1 
Mutations
ICGC Data PortalSUPT20HL1 
TCGA Data PortalSUPT20HL1 
Broad Tumor PortalSUPT20HL1
OASIS PortalSUPT20HL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSUPT20HL1
BioMutasearch SUPT20HL1
DgiDB (Drug Gene Interaction Database)SUPT20HL1
DoCM (Curated mutations)SUPT20HL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUPT20HL1 (select a term)
intoGenSUPT20HL1
Cancer3DSUPT20HL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSUPT20HL1
Genetic Testing Registry SUPT20HL1
NextProtQ3ZLR7 [Medical]
TSGene100130302
GENETestsSUPT20HL1
Target ValidationSUPT20HL1
Huge Navigator SUPT20HL1 [HugePedia]
snp3D : Map Gene to Disease100130302
BioCentury BCIQSUPT20HL1
ClinGenSUPT20HL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130302
Chemical/Pharm GKB GenePA134971476
Clinical trialSUPT20HL1
Miscellaneous
canSAR (ICR)SUPT20HL1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUPT20HL1
EVEXSUPT20HL1
GoPubMedSUPT20HL1
iHOPSUPT20HL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:44:34 CEST 2017

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