Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SUPT20HL2 (SPT20 homolog, SAGA complex component-like 2)

Identity

Alias_namesFAM48B2
family with sequence similarity 48, member B2
suppressor of Ty 20 homolog (S. cerevisiae)-like 2
Other aliasFAM48B1
HGNC (Hugo) SUPT20HL2
LocusID (NCBI) 170067
Atlas_Id 74381
Location Xp22.11  [Link to chromosome band Xp22]
Location_base_pair Starts at 24310862 and ends at 24313315 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUPT20HL2   31797
Cards
Entrez_Gene (NCBI)SUPT20HL2  170067  SPT20 homolog, SAGA complex component-like 2
AliasesFAM48B1; FAM48B2
GeneCards (Weizmann)SUPT20HL2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:24310862-24313315 [Contig_View]  SUPT20HL2 [Vega]
TCGA cBioPortalSUPT20HL2
AceView (NCBI)SUPT20HL2
Genatlas (Paris)SUPT20HL2
WikiGenes170067
SOURCE (Princeton)SUPT20HL2
Genetics Home Reference (NIH)SUPT20HL2
Genomic and cartography
GoldenPath hg38 (UCSC)SUPT20HL2  -     chrX:24310862-24313315 -  Xp22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUPT20HL2  -     Xp22.11   [Description]    (hg19-Feb_2009)
EnsemblSUPT20HL2 - Xp22.11 [CytoView hg19]  SUPT20HL2 - Xp22.11 [CytoView hg38]
Mapping of homologs : NCBISUPT20HL2 [Mapview hg19]  SUPT20HL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001136233
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUPT20HL2
Cluster EST : UnigeneHs.716893 [ NCBI ]
CGAP (NCI)Hs.716893
Gene ExpressionSUPT20HL2 [ NCBI-GEO ]   SUPT20HL2 [ EBI - ARRAY_EXPRESS ]   SUPT20HL2 [ SEEK ]   SUPT20HL2 [ MEM ]
Gene Expression Viewer (FireBrowse)SUPT20HL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170067
GTEX Portal (Tissue expression)SUPT20HL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7V6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7V6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7V6
Splice isoforms : SwissVarP0C7V6
PhosPhoSitePlusP0C7V6
Domains : Interpro (EBI)Spt20   
Domain families : Pfam (Sanger)Spt20 (PF12090)   
Domain families : Pfam (NCBI)pfam12090   
Conserved Domain (NCBI)SUPT20HL2
DMDM Disease mutations170067
Blocks (Seattle)SUPT20HL2
SuperfamilyP0C7V6
Peptide AtlasP0C7V6
IPIIPI00900369   
Protein Interaction databases
DIP (DOE-UCLA)P0C7V6
IntAct (EBI)P0C7V6
BioGRIDSUPT20HL2
STRING (EMBL)SUPT20HL2
ZODIACSUPT20HL2
Ontologies - Pathways
QuickGOP0C7V6
Ontology : AmiGOSAGA complex  transcription cofactor activity  extracellular space  regulation of nucleic acid-templated transcription  
Ontology : EGO-EBISAGA complex  transcription cofactor activity  extracellular space  regulation of nucleic acid-templated transcription  
NDEx NetworkSUPT20HL2
Atlas of Cancer Signalling NetworkSUPT20HL2
Wikipedia pathwaysSUPT20HL2
Orthology - Evolution
OrthoDB170067
Phylogenetic Trees/Animal Genes : TreeFamSUPT20HL2
HOVERGENP0C7V6
HOGENOMP0C7V6
Homologs : HomoloGeneSUPT20HL2
Homology/Alignments : Family Browser (UCSC)SUPT20HL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUPT20HL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUPT20HL2
dbVarSUPT20HL2
ClinVarSUPT20HL2
1000_GenomesSUPT20HL2 
Exome Variant ServerSUPT20HL2
ExAC (Exome Aggregation Consortium)SUPT20HL2 (select the gene name)
Genetic variants : HAPMAP170067
Genomic Variants (DGV)SUPT20HL2 [DGVbeta]
DECIPHERSUPT20HL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUPT20HL2 
Mutations
IcGC Dqt PortalSUPT20HL2 
TCGA Data PortalSUPT20HL2 
Broad Tumor PortalSUPT20HL2
OASIS PortalSUPT20HL2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSUPT20HL2
BioMutasearch SUPT20HL2
DgiDB (Drug Gene Interaction Database)SUPT20HL2
DoCM (Curated mutations)SUPT20HL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUPT20HL2 (select a term)
intoGenSUPT20HL2
Cancer3DSUPT20HL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSUPT20HL2
Genetic Testing Registry SUPT20HL2
NextProtP0C7V6 [Medical]
TSGene170067
GENETestsSUPT20HL2
Target ValidationSUPT20HL2
Huge Navigator SUPT20HL2 [HugePedia]
snp3D : Map Gene to Disease170067
BioCentury BCIQSUPT20HL2
ClinGenSUPT20HL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170067
Chemical/Pharm GKB GenePA134896852
Clinical trialSUPT20HL2
Miscellaneous
canSAR (ICR)SUPT20HL2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUPT20HL2
EVEXSUPT20HL2
GoPubMedSUPT20HL2
iHOPSUPT20HL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:40:46 CEST 2017

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