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SUPT3H (suppressor of Ty 3 homolog (S. cerevisiae))

Identity

Other namesSPT3
SPT3L
HGNC (Hugo) SUPT3H
LocusID (NCBI) 8464
Location 6p21.1
Location_base_pair Starts at 44794467 and ends at 45345788 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SUPT3H   11466
Cards
Entrez_Gene (NCBI)SUPT3H  8464  suppressor of Ty 3 homolog (S. cerevisiae)
GeneCards (Weizmann)SUPT3H
Ensembl (Hinxton)ENSG00000196284 [Gene_View]  chr6:44794467-45345788 [Contig_View]  SUPT3H [Vega]
ICGC DataPortalENSG00000196284
cBioPortalSUPT3H
AceView (NCBI)SUPT3H
Genatlas (Paris)SUPT3H
WikiGenes8464
SOURCE (Princeton)NM_001261823 NM_003599 NM_181356
Genomic and cartography
GoldenPath (UCSC)SUPT3H  -  6p21.1   chr6:44794467-45345788 -  6p21.1   [Description]    (hg19-Feb_2009)
EnsemblSUPT3H - 6p21.1 [CytoView]
Mapping of homologs : NCBISUPT3H [Mapview]
OMIM602947   
Gene and transcription
Genbank (Entrez)AF069734 AF073930 AF279781 AK092340 AK303838
RefSeq transcript (Entrez)NM_001261823 NM_003599 NM_181356
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_007592 NW_001838981 NW_004929326
Consensus coding sequences : CCDS (NCBI)SUPT3H
Cluster EST : UnigeneHs.368325 [ NCBI ]
CGAP (NCI)Hs.368325
Alternative Splicing : Fast-db (Paris)GSHG0026648
Alternative Splicing GalleryENSG00000196284
Gene ExpressionSUPT3H [ NCBI-GEO ]     SUPT3H [ SEEK ]   SUPT3H [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75486 (Uniprot)
NextProtO75486  [Medical]
With graphics : InterProO75486
Splice isoforms : SwissVarO75486 (Swissvar)
Domains : Interpro (EBI)Histone-fold [organisation]   TFIID-18 [organisation]  
Related proteins : CluSTrO75486
Domain families : Pfam (Sanger)TFIID-18kDa (PF02269)   
Domain families : Pfam (NCBI)pfam02269   
DMDM Disease mutations8464
Blocks (Seattle)O75486
Human Protein AtlasENSG00000196284 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasO75486
HPRD04254
IPIIPI00025792   IPI00303875   IPI00384341   IPI00478264   
Protein Interaction databases
DIP (DOE-UCLA)O75486
IntAct (EBI)O75486
FunCoupENSG00000196284
BioGRIDSUPT3H
InParanoidO75486
Interologous Interaction database O75486
IntegromeDBSUPT3H
STRING (EMBL)SUPT3H
Ontologies - Pathways
Ontology : AmiGOtranscription coactivator activity  histone acetyltransferase activity  nucleus  nucleolus  DNA-dependent transcription, initiation  regulation of transcription, DNA-dependent  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  histone deubiquitination  STAGA complex  transcription factor TFTC complex  histone H3 acetylation  positive regulation of transcription, DNA-dependent  protein heterodimerization activity  
Ontology : EGO-EBItranscription coactivator activity  histone acetyltransferase activity  nucleus  nucleolus  DNA-dependent transcription, initiation  regulation of transcription, DNA-dependent  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  histone deubiquitination  STAGA complex  transcription factor TFTC complex  histone H3 acetylation  positive regulation of transcription, DNA-dependent  protein heterodimerization activity  
Pathways : KEGGTranscriptional misregulation in cancer   
Protein Interaction DatabaseSUPT3H
Wikipedia pathwaysSUPT3H
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SUPT3H
snp3D : Map Gene to Disease8464
SNP (GeneSNP Utah)SUPT3H
SNP : HGBaseSUPT3H
Genetic variants : HAPMAPSUPT3H
Exome VariantSUPT3H
1000_GenomesSUPT3H 
ICGC programENSG00000196284 
Somatic Mutations in Cancer : COSMICSUPT3H 
CONAN: Copy Number AnalysisSUPT3H 
Mutations and Diseases : HGMDSUPT3H
Genomic VariantsSUPT3H  SUPT3H [DGVbeta]
dbVarSUPT3H
ClinVarSUPT3H
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM602947   
MedgenSUPT3H
GENETestsSUPT3H
Disease Genetic AssociationSUPT3H
Huge Navigator SUPT3H [HugePedia]  SUPT3H [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSUPT3H
Homology/Alignments : Family Browser (UCSC)SUPT3H
Phylogenetic Trees/Animal Genes : TreeFamSUPT3H
Chemical/Protein Interactions : CTD8464
Chemical/Pharm GKB GenePA36252
Clinical trialSUPT3H
Cancer Resource (Charite)ENSG00000196284
Other databases
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
CoreMineSUPT3H
iHOPSUPT3H
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 17:21:45 CEST 2014

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