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SUPT6H (SPT6 homolog, histone chaperone and transcription elongation factor)

Identity

Alias (NCBI)SPT6
SPT6H
emb-5
HGNC (Hugo) SUPT6H
HGNC Alias symbKIAA0162
SPT6H
HGNC Previous namesuppressor of Ty (S.cerevisiae) 6 homolog
 suppressor of Ty 6 homolog (S. cerevisiae)
 SPT6 homolog, histone chaperone
LocusID (NCBI) 6830
Atlas_Id 42454
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28662205 and ends at 28702679 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ASNSD1 (2q32.2) / SUPT6H (17q11.2)NF1 (17q11.2) / SUPT6H (17q11.2)R3HDM2 (12q13.3) / SUPT6H (17q11.2)
SUPT6H (17q11.2) / APOB (2p24.1)SUPT6H (17q11.2) / BGN (Xq28)SUPT6H (17q11.2) / DTYMK (2q37.3)
SUPT6H (17q11.2) / MRO (18q21.2)SUPT6H (17q11.2) / SUPT6H (17q11.2)SUPT6H (17q11.2) / UTP6 (17q11.2)
R3HDM2 12q13.3 / SUPT6H 17q11.2SUPT6H 17q11.2 / MRO 18q21.2SUPT6H 17q11.2 / UTP6 17q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SUPT6H   11470
Cards
Entrez_Gene (NCBI)SUPT6H    SPT6 homolog, histone chaperone and transcription elongation factor
AliasesSPT6; SPT6H; emb-5
GeneCards (Weizmann)SUPT6H
Ensembl hg19 (Hinxton)ENSG00000109111 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109111 [Gene_View]  ENSG00000109111 [Sequence]  chr17:28662205-28702679 [Contig_View]  SUPT6H [Vega]
ICGC DataPortalENSG00000109111
TCGA cBioPortalSUPT6H
AceView (NCBI)SUPT6H
Genatlas (Paris)SUPT6H
SOURCE (Princeton)SUPT6H
Genetics Home Reference (NIH)SUPT6H
Genomic and cartography
GoldenPath hg38 (UCSC)SUPT6H  -     chr17:28662205-28702679 +  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUPT6H  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathSUPT6H - 17q11.2 [CytoView hg19]  SUPT6H - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000109111
Genome Data Viewer NCBISUPT6H [Mapview hg19]  
OMIM601333   
Gene and transcription
Genbank (Entrez)AF070532 AK126585 AL833607 AW135492 BC003692
RefSeq transcript (Entrez)NM_001320755 NM_003170
Consensus coding sequences : CCDS (NCBI)SUPT6H
Gene ExpressionSUPT6H [ NCBI-GEO ]   SUPT6H [ EBI - ARRAY_EXPRESS ]   SUPT6H [ SEEK ]   SUPT6H [ MEM ]
Gene Expression Viewer (FireBrowse)SUPT6H [ Firebrowse - Broad ]
GenevisibleExpression of SUPT6H in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6830
GTEX Portal (Tissue expression)SUPT6H
Human Protein AtlasENSG00000109111-SUPT6H [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SUPT6H
Human Protein Atlas [tissue]ENSG00000109111-SUPT6H [tissue]
HPRD03211
Protein Interaction databases
BioGRIDSUPT6H
STRING (EMBL)SUPT6H
ZODIACSUPT6H
Ontologies - Pathways
Litterature
PubMed83 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSUPT6H
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:33:53 CEST 2021

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