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SUPT6H (suppressor of Ty 6 homolog (S. cerevisiae))

Identity

Other namesSPT6
SPT6H
emb-5
HGNC (Hugo) SUPT6H
LocusID (NCBI) 6830
Location 17q11.2
Location_base_pair Starts at 26989302 and ends at 27029249 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SUPT6H   11470
Cards
Entrez_Gene (NCBI)SUPT6H  6830  suppressor of Ty 6 homolog (S. cerevisiae)
GeneCards (Weizmann)SUPT6H
Ensembl (Hinxton)ENSG00000109111 [Gene_View]  chr17:26989302-27029249 [Contig_View]  SUPT6H [Vega]
ICGC DataPortalENSG00000109111
cBioPortalSUPT6H
AceView (NCBI)SUPT6H
Genatlas (Paris)SUPT6H
WikiGenes6830
SOURCE (Princeton)NM_003170
Genomic and cartography
GoldenPath (UCSC)SUPT6H  -  17q11.2   chr17:26989302-27029249 +  17q11.2   [Description]    (hg19-Feb_2009)
EnsemblSUPT6H - 17q11.2 [CytoView]
Mapping of homologs : NCBISUPT6H [Mapview]
OMIM601333   
Gene and transcription
Genbank (Entrez)AF070532 AK126585 AL833607 BC003692 BC003696
RefSeq transcript (Entrez)NM_003170
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010783 NW_001838430 NW_004929407
Consensus coding sequences : CCDS (NCBI)SUPT6H
Cluster EST : UnigeneHs.250429 [ NCBI ]
CGAP (NCI)Hs.250429
Alternative Splicing : Fast-db (Paris)GSHG0012346
Alternative Splicing GalleryENSG00000109111
Gene ExpressionSUPT6H [ NCBI-GEO ]     SUPT6H [ SEEK ]   SUPT6H [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7KZ85 (Uniprot)
NextProtQ7KZ85  [Medical]
With graphics : InterProQ7KZ85
Splice isoforms : SwissVarQ7KZ85 (Swissvar)
Domaine pattern : Prosite (Expaxy)S1 (PS50126)    SH2 (PS50001)   
Domains : Interpro (EBI)NA-bd_OB-fold [organisation]   Rbsml_prot_S1_RNA-bd_dom [organisation]   RNA-binding_domain_S1 [organisation]   RNaseH-like_dom [organisation]   RuvA_2-like [organisation]   SH2 [organisation]   Spt6_acidic_N_dom [organisation]   Spt6_dom [organisation]   Spt6_HTH_DNA-bd_dom [organisation]   SPT6_YqgF [organisation]   Tex-like_dom [organisation]   Tex_RuvX-like_dom [organisation]   TF_Spt6 [organisation]   YqgF/RNaseH-like_dom [organisation]  
Related proteins : CluSTrQ7KZ85
Domain families : Pfam (Sanger)DLD (PF14878)    HTH_44 (PF14641)    S1 (PF00575)    SH2_2 (PF14633)    SPT6_acidic (PF14632)    YqgF (PF14639)   
Domain families : Pfam (NCBI)pfam14878    pfam14641    pfam00575    pfam14633    pfam14632    pfam14639   
Domain families : Smart (EMBL)S1 (SM00316)  SH2 (SM00252)  YqgFc (SM00732)  
DMDM Disease mutations6830
Blocks (Seattle)Q7KZ85
Human Protein AtlasENSG00000109111 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ7KZ85
HPRD03211
IPIIPI00784161   IPI00430770   IPI00456683   
Protein Interaction databases
DIP (DOE-UCLA)Q7KZ85
IntAct (EBI)Q7KZ85
FunCoupENSG00000109111
BioGRIDSUPT6H
InParanoidQ7KZ85
Interologous Interaction database Q7KZ85
IntegromeDBSUPT6H
STRING (EMBL)SUPT6H
Ontologies - Pathways
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  chromatin remodeling  transcription, DNA-templated  regulation of transcription, DNA-templated  mRNA processing  RNA splicing  regulation of mRNA export from nucleus  viral process  hydrolase activity, acting on ester bonds  positive regulation of transcription elongation from RNA polymerase II promoter  histone binding  poly(A) RNA binding  regulation of isotype switching  regulation of mRNA processing  mRNA transport  regulation of muscle cell differentiation  negative regulation of histone H3-K27 methylation  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  chromatin remodeling  transcription, DNA-templated  regulation of transcription, DNA-templated  mRNA processing  RNA splicing  regulation of mRNA export from nucleus  viral process  hydrolase activity, acting on ester bonds  positive regulation of transcription elongation from RNA polymerase II promoter  histone binding  poly(A) RNA binding  regulation of isotype switching  regulation of mRNA processing  mRNA transport  regulation of muscle cell differentiation  negative regulation of histone H3-K27 methylation  
Protein Interaction DatabaseSUPT6H
Wikipedia pathwaysSUPT6H
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SUPT6H
snp3D : Map Gene to Disease6830
SNP (GeneSNP Utah)SUPT6H
SNP : HGBaseSUPT6H
Genetic variants : HAPMAPSUPT6H
Exome VariantSUPT6H
1000_GenomesSUPT6H 
ICGC programENSG00000109111 
Somatic Mutations in Cancer : COSMICSUPT6H 
CONAN: Copy Number AnalysisSUPT6H 
Mutations and Diseases : HGMDSUPT6H
Mutations and Diseases : intOGenSUPT6H
Genomic VariantsSUPT6H  SUPT6H [DGVbeta]
dbVarSUPT6H
ClinVarSUPT6H
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM601333   
MedgenSUPT6H
GENETestsSUPT6H
Disease Genetic AssociationSUPT6H
Huge Navigator SUPT6H [HugePedia]  SUPT6H [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSUPT6H
Homology/Alignments : Family Browser (UCSC)SUPT6H
Phylogenetic Trees/Animal Genes : TreeFamSUPT6H
Chemical/Protein Interactions : CTD6830
Chemical/Pharm GKB GenePA36256
Clinical trialSUPT6H
Cancer Resource (Charite)ENSG00000109111
Other databases
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
CoreMineSUPT6H
iHOPSUPT6H
OncoSearchSUPT6H
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:21:08 CEST 2014

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