| Nomenclature | | HGNC (Hugo) | SUPT6H 11470 |
| Entrez_Gene (NCBI) | SUPT6H 6830 suppressor of Ty 6 homolog (S. cerevisiae) |
| Cards | | GeneCards (Weizmann) | SUPT6H |
| Ensembl (Hinxton) | ENSG00000109111 [Gene_View] chr17:26989302-27029249 [Contig_View] SUPT6H [Vega] |
| AceView (NCBI) | SUPT6H |
| Genatlas (Paris) | SUPT6H |
| SOURCE (Stanford) | NM_003170 |
| Genomic and cartography | | GoldenPath (UCSC) | SUPT6H - 17q11.2 chr17:26989302-27029249 + 17q11.2 [Description] (hg19-Feb_2009) |
| Ensembl | SUPT6H - 17q11.2 [CytoView] |
| Mapping of homologs : NCBI | SUPT6H [Mapview] |
| OMIM | 601333 |
| Gene and transcription |
| Genbank (Entrez) | AF070532 AK126585 AL833607 BC003692 BC003696 |
| RefSeq transcript (SRS) | NM_003170 |
| RefSeq transcript (Entrez) | NM_003170 |
| RefSeq genomic (SRS) | AC_000149 NC_000017 NC_018928 NT_010799 NW_001838430 NW_004078092 |
| RefSeq genomic (Entrez) | AC_000149 NC_000017 NC_018928 NT_010799 NW_001838430 NW_004078092 |
| Consensus coding sequences : CCDS (NCBI) | SUPT6H |
| Cluster EST : Unigene | Hs.250429 [ SRS ] Hs.250429 [ NCBI ] |
| CGAP (NCI) | Hs.250429 |
| Alternative Splicing : Fast-db (Paris) | GSHG0012346 |
| Alternative Splicing Gallery | ENSG00000109111 |
| Gene Expression | SUPT6H [ NCBI-GEO ] SUPT6H [ EBI - ARRAY_EXPRESS ] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q7KZ85 (SRS) Q7KZ85 (Uniprot) |
| NextProt | Q7KZ85 |
| With graphics : InterPro | Q7KZ85 |
| Splice isoforms : SwissVar | Q7KZ85(Swissvar) |
| Domaine pattern : Prosite (SRS) | S1 (PS50126) SH2 (PS50001) |
| Domaine pattern : Prosite (Expaxy) | S1 (PS50126) SH2 (PS50001) |
| Domains : Interpro (SRS) | NA-bd_OB-fold NA-bd_OB-fold-like Rbsml_prot_S1_RNA-bd_dom RNA-binding_domain_S1 SH2 Tex-like_dom Tex_RuvX-like_dom TF_Spt6 YqgF/RNaseH-like_dom |
| Domains : Interpro (EBI) | NA-bd_OB-fold NA-bd_OB-fold-like Rbsml_prot_S1_RNA-bd_dom RNA-binding_domain_S1 SH2 Tex-like_dom Tex_RuvX-like_dom TF_Spt6 YqgF/RNaseH-like_dom |
| Related proteins : CluSTr | Q7KZ85 |
| Domain families : Pfam (SRS) | S1 (PF00575) SH2 (PF00017) |
| Domain families : Pfam (Sanger) | S1 (PF00575) SH2 (PF00017) |
| Domain families : Pfam (NCBI) | pfam00575 pfam00017 |
| Domain families : Smart (EMBL) | S1 (SM00316) SH2 (SM00252) YqgFc (SM00732) |
| DMDM | 6830 |
| Blocks (Seattle) | Q7KZ85 |
| Human Protein Atlas | ENSG00000109111 |
| HPRD | 03211 |
| IPI | IPI00784161 IPI00430770 IPI00456683 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q7KZ85 |
| IntAct (EBI) | Q7KZ85 |
| FunCoup | ENSG00000109111 |
| REACTOME | SUPT6H |
| Protein Interaction Database | 6830 |
| BioGRID | SUPT6H |
| InParanoid | Q7KZ85 |
| Interologous Interaction database | Q7KZ85 |
| IntegromeDB | SUPT6H |
| Polymorphism : SNP, mutations, diseases | | SNP Single Nucleotide Polymorphism (NCBI) | SUPT6H |
| SNP (GeneSNP Utah) | SUPT6H |
| SNP : HGBase | SUPT6H |
| Genetic variants : HAPMAP | SUPT6H |
| Somatic Mutations in Cancer : COSMIC | SUPT6H |
| CONAN: Copy Number Analysis | SUPT6H |
| Mutations and Diseases : HGMD | SUPT6H |
| OMIM | 601333 |
| GENETests | 601333 |
| Disease Genetic Association | SUPT6H |
| Huge Navigator |
SUPT6H [HugePedia] SUPT6H [HugeCancerGEM] |
| Genomic Variants | SUPT6H SUPT6H [DGVbeta] |
| snp3D : Map Gene to Disease | 6830 |
| General knowledge |
|---|
| Homologs : HomoloGene | SUPT6H |
| Homology/Alignments : Family Browser (UCSC) | SUPT6H |
| Phylogenetic Trees/Animal Genes : TreeFam | SUPT6H |
| Chemical/Protein Interactions : CTD | 6830 |
| Chemical/Pharm GKB Gene | PA36256 |
| Clinical trial | SUPT6H |
| Cancer Resource (Charite) | ENSG00000109111 |
| Ontology : AmiGO | sequence-specific DNA binding transcription factor activity RNA binding nucleus chromatin remodeling transcription, DNA-dependent regulation of transcription, DNA-dependent regulation of transcription from RNA polymerase II promoter hydrolase activity, acting on ester bonds virus-host interaction regulation of DNA-dependent transcription, elongation |
| Ontology : EGO-EBI | sequence-specific DNA binding transcription factor activity RNA binding nucleus chromatin remodeling transcription, DNA-dependent regulation of transcription, DNA-dependent regulation of transcription from RNA polymerase II promoter hydrolase activity, acting on ester bonds virus-host interaction regulation of DNA-dependent transcription, elongation |
| Other databases |
| Probes |
|---|
| Litterature | | PubMed | 26 Pubmed reference(s) in Entrez |
| PubGene | SUPT6H |
| iHOP | SUPT6H |
