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SUPT7L (SPT7 like, STAGA complex gamma subunit)

Identity

Alias_namessuppressor of Ty 7 (S. cerevisiae)-like
Alias_symbol (synonym)STAF65gamma
KIAA0764
SPT7L
STAF65
Other aliasSTAF65(gamma)
STAF65G
SUPT7H
HGNC (Hugo) SUPT7L
LocusID (NCBI) 9913
Atlas_Id 43806
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27650810 and ends at 27663840 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SUPT7L (2p23.3) / RBKS (2p23.2)SUPT7L (2p23.3) / RPL38 (17q25.1)SUPT7L (2p23.3) / SUPT7L (2p23.3)
USF1 (1q23.3) / SUPT7L (2p23.3)SUPT7L 2p23.3 / RBKS 2p23.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

ICGC Data Portal
Nomenclature
HGNC (Hugo)SUPT7L   30632
Cards
Entrez_Gene (NCBI)SUPT7L  9913  SPT7 like, STAGA complex gamma subunit
AliasesSPT7L; STAF65; STAF65(gamma); STAF65G; 
SUPT7H
GeneCards (Weizmann)SUPT7L
Ensembl hg19 (Hinxton)ENSG00000119760 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119760 [Gene_View]  chr2:27650810-27663840 [Contig_View]  SUPT7L [Vega]
ICGC DataPortalENSG00000119760
TCGA cBioPortalSUPT7L
AceView (NCBI)SUPT7L
Genatlas (Paris)SUPT7L
WikiGenes9913
SOURCE (Princeton)SUPT7L
Genetics Home Reference (NIH)SUPT7L
Genomic and cartography
GoldenPath hg38 (UCSC)SUPT7L  -     chr2:27650810-27663840 -  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUPT7L  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblSUPT7L - 2p23.3 [CytoView hg19]  SUPT7L - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBISUPT7L [Mapview hg19]  SUPT7L [Mapview hg38]
OMIM612762   
Gene and transcription
Genbank (Entrez)AB018307 AF197954 AF224759 AK000329 AK000616
RefSeq transcript (Entrez)NM_001282729 NM_001282730 NM_001282731 NM_001282732 NM_014860
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUPT7L
Cluster EST : UnigeneHs.6232 [ NCBI ]
CGAP (NCI)Hs.6232
Alternative Splicing GalleryENSG00000119760
Gene ExpressionSUPT7L [ NCBI-GEO ]   SUPT7L [ EBI - ARRAY_EXPRESS ]   SUPT7L [ SEEK ]   SUPT7L [ MEM ]
Gene Expression Viewer (FireBrowse)SUPT7L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9913
GTEX Portal (Tissue expression)SUPT7L
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94864   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94864  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94864
Splice isoforms : SwissVarO94864
PhosPhoSitePlusO94864
Domains : Interpro (EBI)BTP   
Domain families : Pfam (Sanger)Bromo_TP (PF07524)   
Domain families : Pfam (NCBI)pfam07524   
Domain families : Smart (EMBL)BTP (SM00576)  
Conserved Domain (NCBI)SUPT7L
DMDM Disease mutations9913
Blocks (Seattle)SUPT7L
SuperfamilyO94864
Human Protein AtlasENSG00000119760
Peptide AtlasO94864
HPRD18115
IPIIPI00006651   IPI00219415   
Protein Interaction databases
DIP (DOE-UCLA)O94864
IntAct (EBI)O94864
FunCoupENSG00000119760
BioGRIDSUPT7L
STRING (EMBL)SUPT7L
ZODIACSUPT7L
Ontologies - Pathways
QuickGOO94864
Ontology : AmiGOtranscription coactivator activity  histone acetyltransferase activity  protein binding  nucleus  nucleus  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  STAGA complex  histone H3 acetylation  maintenance of protein location in nucleus  
Ontology : EGO-EBItranscription coactivator activity  histone acetyltransferase activity  protein binding  nucleus  nucleus  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  STAGA complex  histone H3 acetylation  maintenance of protein location in nucleus  
NDEx NetworkSUPT7L
Atlas of Cancer Signalling NetworkSUPT7L
Wikipedia pathwaysSUPT7L
Orthology - Evolution
OrthoDB9913
GeneTree (enSembl)ENSG00000119760
Phylogenetic Trees/Animal Genes : TreeFamSUPT7L
HOVERGENO94864
HOGENOMO94864
Homologs : HomoloGeneSUPT7L
Homology/Alignments : Family Browser (UCSC)SUPT7L
Gene fusions - Rearrangements
Fusion : MitelmanSUPT7L/RBKS [2p23.3/2p23.2]  
Fusion: TCGASUPT7L 2p23.3 RBKS 2p23.2 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUPT7L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUPT7L
dbVarSUPT7L
ClinVarSUPT7L
1000_GenomesSUPT7L 
Exome Variant ServerSUPT7L
ExAC (Exome Aggregation Consortium)SUPT7L (select the gene name)
Genetic variants : HAPMAP9913
Genomic Variants (DGV)SUPT7L [DGVbeta]
DECIPHERSUPT7L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUPT7L 
MutationsSUPT7L 
TCGA Data PortalSUPT7L 
Broad Tumor PortalSUPT7L
OASIS PortalSUPT7L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUPT7L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUPT7L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUPT7L
DgiDB (Drug Gene Interaction Database)SUPT7L
DoCM (Curated mutations)SUPT7L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUPT7L (select a term)
intoGenSUPT7L
Cancer3DSUPT7L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612762   
Orphanet
MedgenSUPT7L
Genetic Testing Registry SUPT7L
NextProtO94864 [Medical]
TSGene9913
GENETestsSUPT7L
Target ValidationSUPT7L
Huge Navigator SUPT7L [HugePedia]
snp3D : Map Gene to Disease9913
BioCentury BCIQSUPT7L
ClinGenSUPT7L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9913
Chemical/Pharm GKB GenePA142670854
Clinical trialSUPT7L
Miscellaneous
canSAR (ICR)SUPT7L (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUPT7L
EVEXSUPT7L
GoPubMedSUPT7L
iHOPSUPT7L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:33:47 CEST 2017

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