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SURF1 (SURF1, cytochrome c oxidase assembly factor)

Identity

Alias_namessurfeit 1
Other aliasCMT4K
HGNC (Hugo) SURF1
LocusID (NCBI) 6834
Atlas_Id 46853
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 133351805 and ends at 133356485 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SURF1   11474
Cards
Entrez_Gene (NCBI)SURF1  6834  SURF1, cytochrome c oxidase assembly factor
AliasesCMT4K
GeneCards (Weizmann)SURF1
Ensembl hg19 (Hinxton)ENSG00000148290 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148290 [Gene_View]  chr9:133351805-133356485 [Contig_View]  SURF1 [Vega]
ICGC DataPortalENSG00000148290
TCGA cBioPortalSURF1
AceView (NCBI)SURF1
Genatlas (Paris)SURF1
WikiGenes6834
SOURCE (Princeton)SURF1
Genetics Home Reference (NIH)SURF1
Genomic and cartography
GoldenPath hg38 (UCSC)SURF1  -     chr9:133351805-133356485 -  9q34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SURF1  -     9q34.2   [Description]    (hg19-Feb_2009)
EnsemblSURF1 - 9q34.2 [CytoView hg19]  SURF1 - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBISURF1 [Mapview hg19]  SURF1 [Mapview hg38]
OMIM185620   256000   616684   
Gene and transcription
Genbank (Entrez)AI479876 AK291122 BC028314 BC071658 BE645550
RefSeq transcript (Entrez)NM_001280787 NM_003172
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SURF1
Cluster EST : UnigeneHs.512464 [ NCBI ]
CGAP (NCI)Hs.512464
Alternative Splicing GalleryENSG00000148290
Gene ExpressionSURF1 [ NCBI-GEO ]   SURF1 [ EBI - ARRAY_EXPRESS ]   SURF1 [ SEEK ]   SURF1 [ MEM ]
Gene Expression Viewer (FireBrowse)SURF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6834
GTEX Portal (Tissue expression)SURF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15526   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15526  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15526
Splice isoforms : SwissVarQ15526
PhosPhoSitePlusQ15526
Domaine pattern : Prosite (Expaxy)SURF1 (PS50895)   
Domains : Interpro (EBI)Surf1/Shy1   
Domain families : Pfam (Sanger)SURF1 (PF02104)   
Domain families : Pfam (NCBI)pfam02104   
Conserved Domain (NCBI)SURF1
DMDM Disease mutations6834
Blocks (Seattle)SURF1
SuperfamilyQ15526
Human Protein AtlasENSG00000148290
Peptide AtlasQ15526
HPRD01711
IPIIPI00018034   IPI00642942   
Protein Interaction databases
DIP (DOE-UCLA)Q15526
IntAct (EBI)Q15526
FunCoupENSG00000148290
BioGRIDSURF1
STRING (EMBL)SURF1
ZODIACSURF1
Ontologies - Pathways
QuickGOQ15526
Ontology : AmiGOcytochrome-c oxidase activity  protein binding  mitochondrial respiratory chain  oxidative phosphorylation  ATP biosynthetic process  respiratory chain complex IV assembly  aerobic respiration  integral component of membrane  mitochondrial respiratory chain complex IV assembly  oxidation-reduction process  hydrogen ion transmembrane transport  
Ontology : EGO-EBIcytochrome-c oxidase activity  protein binding  mitochondrial respiratory chain  oxidative phosphorylation  ATP biosynthetic process  respiratory chain complex IV assembly  aerobic respiration  integral component of membrane  mitochondrial respiratory chain complex IV assembly  oxidation-reduction process  hydrogen ion transmembrane transport  
NDEx NetworkSURF1
Atlas of Cancer Signalling NetworkSURF1
Wikipedia pathwaysSURF1
Orthology - Evolution
OrthoDB6834
GeneTree (enSembl)ENSG00000148290
Phylogenetic Trees/Animal Genes : TreeFamSURF1
HOVERGENQ15526
HOGENOMQ15526
Homologs : HomoloGeneSURF1
Homology/Alignments : Family Browser (UCSC)SURF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSURF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SURF1
dbVarSURF1
ClinVarSURF1
1000_GenomesSURF1 
Exome Variant ServerSURF1
ExAC (Exome Aggregation Consortium)SURF1 (select the gene name)
Genetic variants : HAPMAP6834
Genomic Variants (DGV)SURF1 [DGVbeta]
DECIPHERSURF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSURF1 
Mutations
ICGC Data PortalSURF1 
TCGA Data PortalSURF1 
Broad Tumor PortalSURF1
OASIS PortalSURF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSURF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSURF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SURF1
DgiDB (Drug Gene Interaction Database)SURF1
DoCM (Curated mutations)SURF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SURF1 (select a term)
intoGenSURF1
Cancer3DSURF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM185620    256000    616684   
Orphanet19814    22610    10947   
MedgenSURF1
Genetic Testing Registry SURF1
NextProtQ15526 [Medical]
TSGene6834
GENETestsSURF1
Target ValidationSURF1
Huge Navigator SURF1 [HugePedia]
snp3D : Map Gene to Disease6834
BioCentury BCIQSURF1
ClinGenSURF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6834
Chemical/Pharm GKB GenePA36259
Clinical trialSURF1
Miscellaneous
canSAR (ICR)SURF1 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSURF1
EVEXSURF1
GoPubMedSURF1
iHOPSURF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:16:09 CEST 2017

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