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SURF2 (surfeit 2)

Identity

Other aliasSURF-2
HGNC (Hugo) SURF2
LocusID (NCBI) 6835
Atlas_Id 74382
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 133356545 and ends at 133361165 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PUF60 (8q24.3) / SURF2 (9q34.2)SURF2 (9q34.2) / NUP210 (3p25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SURF2   11475
Cards
Entrez_Gene (NCBI)SURF2  6835  surfeit 2
AliasesSURF-2
GeneCards (Weizmann)SURF2
Ensembl hg19 (Hinxton)ENSG00000148291 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148291 [Gene_View]  chr9:133356545-133361165 [Contig_View]  SURF2 [Vega]
ICGC DataPortalENSG00000148291
TCGA cBioPortalSURF2
AceView (NCBI)SURF2
Genatlas (Paris)SURF2
WikiGenes6835
SOURCE (Princeton)SURF2
Genetics Home Reference (NIH)SURF2
Genomic and cartography
GoldenPath hg38 (UCSC)SURF2  -     chr9:133356545-133361165 +  9q34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SURF2  -     9q34.2   [Description]    (hg19-Feb_2009)
EnsemblSURF2 - 9q34.2 [CytoView hg19]  SURF2 - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBISURF2 [Mapview hg19]  SURF2 [Mapview hg38]
OMIM185630   
Gene and transcription
Genbank (Entrez)AI808831 BC014411 BI118187 BM789997 BP244646
RefSeq transcript (Entrez)NM_001278928 NM_017503
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SURF2
Cluster EST : UnigeneHs.159448 [ NCBI ]
CGAP (NCI)Hs.159448
Alternative Splicing GalleryENSG00000148291
Gene ExpressionSURF2 [ NCBI-GEO ]   SURF2 [ EBI - ARRAY_EXPRESS ]   SURF2 [ SEEK ]   SURF2 [ MEM ]
Gene Expression Viewer (FireBrowse)SURF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6835
GTEX Portal (Tissue expression)SURF2
Human Protein AtlasENSG00000148291-SURF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15527   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15527  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15527
Splice isoforms : SwissVarQ15527
PhosPhoSitePlusQ15527
Domains : Interpro (EBI)Surf2   
Domain families : Pfam (Sanger)SURF2 (PF05477)   
Domain families : Pfam (NCBI)pfam05477   
Conserved Domain (NCBI)SURF2
DMDM Disease mutations6835
Blocks (Seattle)SURF2
SuperfamilyQ15527
Human Protein Atlas [tissue]ENSG00000148291-SURF2 [tissue]
Peptide AtlasQ15527
HPRD15948
IPIIPI00018037   
Protein Interaction databases
DIP (DOE-UCLA)Q15527
IntAct (EBI)Q15527
FunCoupENSG00000148291
BioGRIDSURF2
STRING (EMBL)SURF2
ZODIACSURF2
Ontologies - Pathways
QuickGOQ15527
Ontology : AmiGOmolecular_function  cellular_component  nucleus  nucleolus  plasma membrane  biological_process  nuclear speck  
Ontology : EGO-EBImolecular_function  cellular_component  nucleus  nucleolus  plasma membrane  biological_process  nuclear speck  
NDEx NetworkSURF2
Atlas of Cancer Signalling NetworkSURF2
Wikipedia pathwaysSURF2
Orthology - Evolution
OrthoDB6835
GeneTree (enSembl)ENSG00000148291
Phylogenetic Trees/Animal Genes : TreeFamSURF2
HOVERGENQ15527
HOGENOMQ15527
Homologs : HomoloGeneSURF2
Homology/Alignments : Family Browser (UCSC)SURF2
Gene fusions - Rearrangements
Tumor Fusion PortalSURF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSURF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SURF2
dbVarSURF2
ClinVarSURF2
1000_GenomesSURF2 
Exome Variant ServerSURF2
ExAC (Exome Aggregation Consortium)ENSG00000148291
GNOMAD BrowserENSG00000148291
Genetic variants : HAPMAP6835
Genomic Variants (DGV)SURF2 [DGVbeta]
DECIPHERSURF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSURF2 
Mutations
ICGC Data PortalSURF2 
TCGA Data PortalSURF2 
Broad Tumor PortalSURF2
OASIS PortalSURF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSURF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSURF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SURF2
DgiDB (Drug Gene Interaction Database)SURF2
DoCM (Curated mutations)SURF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SURF2 (select a term)
intoGenSURF2
Cancer3DSURF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM185630   
Orphanet
DisGeNETSURF2
MedgenSURF2
Genetic Testing Registry SURF2
NextProtQ15527 [Medical]
TSGene6835
GENETestsSURF2
Target ValidationSURF2
Huge Navigator SURF2 [HugePedia]
snp3D : Map Gene to Disease6835
BioCentury BCIQSURF2
ClinGenSURF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6835
Chemical/Pharm GKB GenePA36260
Clinical trialSURF2
Miscellaneous
canSAR (ICR)SURF2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSURF2
EVEXSURF2
GoPubMedSURF2
iHOPSURF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:17:00 CET 2017

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