Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SURF4 (surfeit 4)

Identity

Alias_symbol (synonym)ERV29
FLJ22993
MGC102753
Other alias
HGNC (Hugo) SURF4
LocusID (NCBI) 6836
Atlas_Id 74383
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 136228325 and ends at 136244820 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANP32A (15q23) / SURF4 (9q34.2)CD81 (11p15.5) / SURF4 (9q34.2)DLD (7q31.1) / SURF4 (9q34.2)
LOC100507412 (-) / SURF4 (9q34.2)MAF1 (8q24.3) / SURF4 (9q34.2)SURF4 (9q34.2) / ACO2 (22q13.2)
SURF4 (9q34.2) / CUX1 (7q22.1)SURF4 (9q34.2) / FTL (19q13.33)SURF4 (9q34.2) / SPTLC2 (14q24.3)
SURF4 (9q34.2) / SURF4 (9q34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SURF4   11476
Cards
Entrez_Gene (NCBI)SURF4  6836  surfeit 4
AliasesERV29
GeneCards (Weizmann)SURF4
Ensembl hg19 (Hinxton)ENSG00000148248 [Gene_View]  chr9:136228325-136244820 [Contig_View]  SURF4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000148248 [Gene_View]  chr9:136228325-136244820 [Contig_View]  SURF4 [Vega]
ICGC DataPortalENSG00000148248
TCGA cBioPortalSURF4
AceView (NCBI)SURF4
Genatlas (Paris)SURF4
WikiGenes6836
SOURCE (Princeton)SURF4
Genetics Home Reference (NIH)SURF4
Genomic and cartography
GoldenPath hg19 (UCSC)SURF4  -     chr9:136228325-136244820 -  9q34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SURF4  -     9q34.2   [Description]    (hg38-Dec_2013)
EnsemblSURF4 - 9q34.2 [CytoView hg19]  SURF4 - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBISURF4 [Mapview hg19]  SURF4 [Mapview hg38]
OMIM185660   
Gene and transcription
Genbank (Entrez)AF078866 AF078867 AK026646 AK293434 AK295435
RefSeq transcript (Entrez)NM_001280788 NM_001280789 NM_001280790 NM_001280791 NM_001280792 NM_001280793 NM_033161
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929367 NW_009646201
Consensus coding sequences : CCDS (NCBI)SURF4
Cluster EST : UnigeneHs.512465 [ NCBI ]
CGAP (NCI)Hs.512465
Alternative Splicing GalleryENSG00000148248
Gene ExpressionSURF4 [ NCBI-GEO ]   SURF4 [ EBI - ARRAY_EXPRESS ]   SURF4 [ SEEK ]   SURF4 [ MEM ]
Gene Expression Viewer (FireBrowse)SURF4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6836
GTEX Portal (Tissue expression)SURF4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15260   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15260  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15260
Splice isoforms : SwissVarO15260
PhosPhoSitePlusO15260
Domaine pattern : Prosite (Expaxy)SURF4 (PS01339)   
Domains : Interpro (EBI)Surf4   
Domain families : Pfam (Sanger)SURF4 (PF02077)   
Domain families : Pfam (NCBI)pfam02077   
Conserved Domain (NCBI)SURF4
DMDM Disease mutations6836
Blocks (Seattle)SURF4
SuperfamilyO15260
Human Protein AtlasENSG00000148248
Peptide AtlasO15260
HPRD01715
IPIIPI00005737   IPI00922900   IPI01015290   IPI00922295   IPI00399142   IPI00641719   
Protein Interaction databases
DIP (DOE-UCLA)O15260
IntAct (EBI)O15260
FunCoupENSG00000148248
BioGRIDSURF4
STRING (EMBL)SURF4
ZODIACSURF4
Ontologies - Pathways
QuickGOO15260
Ontology : AmiGOGolgi membrane  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  Golgi organization  positive regulation of organelle organization  integral component of membrane  protein exit from endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment membrane  early endosome to Golgi transport  
Ontology : EGO-EBIGolgi membrane  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  Golgi organization  positive regulation of organelle organization  integral component of membrane  protein exit from endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment membrane  early endosome to Golgi transport  
NDEx NetworkSURF4
Atlas of Cancer Signalling NetworkSURF4
Wikipedia pathwaysSURF4
Orthology - Evolution
OrthoDB6836
GeneTree (enSembl)ENSG00000148248
Phylogenetic Trees/Animal Genes : TreeFamSURF4
HOVERGENO15260
HOGENOMO15260
Homologs : HomoloGeneSURF4
Homology/Alignments : Family Browser (UCSC)SURF4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSURF4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SURF4
dbVarSURF4
ClinVarSURF4
1000_GenomesSURF4 
Exome Variant ServerSURF4
ExAC (Exome Aggregation Consortium)SURF4 (select the gene name)
Genetic variants : HAPMAP6836
Genomic Variants (DGV)SURF4 [DGVbeta]
DECIPHER (Syndromes)9:136228325-136244820  ENSG00000148248
CONAN: Copy Number AnalysisSURF4 
Mutations
ICGC Data PortalSURF4 
TCGA Data PortalSURF4 
Broad Tumor PortalSURF4
OASIS PortalSURF4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSURF4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSURF4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SURF4
DgiDB (Drug Gene Interaction Database)SURF4
DoCM (Curated mutations)SURF4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SURF4 (select a term)
intoGenSURF4
Cancer3DSURF4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM185660   
Orphanet
MedgenSURF4
Genetic Testing Registry SURF4
NextProtO15260 [Medical]
TSGene6836
GENETestsSURF4
Huge Navigator SURF4 [HugePedia]
snp3D : Map Gene to Disease6836
BioCentury BCIQSURF4
ClinGenSURF4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6836
Chemical/Pharm GKB GenePA36261
Clinical trialSURF4
Miscellaneous
canSAR (ICR)SURF4 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSURF4
EVEXSURF4
GoPubMedSURF4
iHOPSURF4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:47:08 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.