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SURF6 (surfeit 6)

Identity

Alias_symbol (synonym)FLJ30322
RRP14
Other alias
HGNC (Hugo) SURF6
LocusID (NCBI) 6838
Atlas_Id 74384
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 136197543 and ends at 136203047 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MED22 (9q34.2) / SURF6 (9q34.2)SURF6 (9q34.2) / RPL38 (17q25.1)SURF6 (9q34.2) / TTR (18q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SURF6   11478
Cards
Entrez_Gene (NCBI)SURF6  6838  surfeit 6
AliasesRRP14
GeneCards (Weizmann)SURF6
Ensembl hg19 (Hinxton) [Gene_View]  chr9:136197543-136203047 [Contig_View]  SURF6 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:136197543-136203047 [Contig_View]  SURF6 [Vega]
TCGA cBioPortalSURF6
AceView (NCBI)SURF6
Genatlas (Paris)SURF6
WikiGenes6838
SOURCE (Princeton)SURF6
Genetics Home Reference (NIH)SURF6
Genomic and cartography
GoldenPath hg19 (UCSC)SURF6  -     chr9:136197543-136203047 -  9q34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SURF6  -     9q34.2   [Description]    (hg38-Dec_2013)
EnsemblSURF6 - 9q34.2 [CytoView hg19]  SURF6 - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBISURF6 [Mapview hg19]  SURF6 [Mapview hg38]
OMIM185642   
Gene and transcription
Genbank (Entrez)AI085033 AK054884 BC003001 BC006197 BC014878
RefSeq transcript (Entrez)NM_001278942 NM_006753
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929367 NW_009646201
Consensus coding sequences : CCDS (NCBI)SURF6
Cluster EST : UnigeneHs.274430 [ NCBI ]
CGAP (NCI)Hs.274430
Gene ExpressionSURF6 [ NCBI-GEO ]   SURF6 [ EBI - ARRAY_EXPRESS ]   SURF6 [ SEEK ]   SURF6 [ MEM ]
Gene Expression Viewer (FireBrowse)SURF6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6838
GTEX Portal (Tissue expression)SURF6
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75683   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75683  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75683
Splice isoforms : SwissVarO75683
PhosPhoSitePlusO75683
Domains : Interpro (EBI)Rrp14/SURF6_C    SURF6   
Domain families : Pfam (Sanger)SURF6 (PF04935)   
Domain families : Pfam (NCBI)pfam04935   
Conserved Domain (NCBI)SURF6
DMDM Disease mutations6838
Blocks (Seattle)SURF6
SuperfamilyO75683
Peptide AtlasO75683
HPRD01714
IPIIPI00026606   
Protein Interaction databases
DIP (DOE-UCLA)O75683
IntAct (EBI)O75683
BioGRIDSURF6
STRING (EMBL)SURF6
ZODIACSURF6
Ontologies - Pathways
QuickGOO75683
Ontology : AmiGOgranular component  DNA binding  RNA binding  nucleoplasm  nucleolus  ribosome biogenesis  poly(A) RNA binding  
Ontology : EGO-EBIgranular component  DNA binding  RNA binding  nucleoplasm  nucleolus  ribosome biogenesis  poly(A) RNA binding  
NDEx NetworkSURF6
Atlas of Cancer Signalling NetworkSURF6
Wikipedia pathwaysSURF6
Orthology - Evolution
OrthoDB6838
Phylogenetic Trees/Animal Genes : TreeFamSURF6
HOVERGENO75683
HOGENOMO75683
Homologs : HomoloGeneSURF6
Homology/Alignments : Family Browser (UCSC)SURF6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSURF6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SURF6
dbVarSURF6
ClinVarSURF6
1000_GenomesSURF6 
Exome Variant ServerSURF6
ExAC (Exome Aggregation Consortium)SURF6 (select the gene name)
Genetic variants : HAPMAP6838
Genomic Variants (DGV)SURF6 [DGVbeta]
DECIPHER (Syndromes)9:136197543-136203047  
CONAN: Copy Number AnalysisSURF6 
Mutations
ICGC Data PortalSURF6 
TCGA Data PortalSURF6 
Broad Tumor PortalSURF6
OASIS PortalSURF6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSURF6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSURF6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SURF6
DgiDB (Drug Gene Interaction Database)SURF6
DoCM (Curated mutations)SURF6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SURF6 (select a term)
intoGenSURF6
Cancer3DSURF6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM185642   
Orphanet
MedgenSURF6
Genetic Testing Registry SURF6
NextProtO75683 [Medical]
TSGene6838
GENETestsSURF6
Huge Navigator SURF6 [HugePedia]
snp3D : Map Gene to Disease6838
BioCentury BCIQSURF6
ClinGenSURF6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6838
Chemical/Pharm GKB GenePA36263
Clinical trialSURF6
Miscellaneous
canSAR (ICR)SURF6 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSURF6
EVEXSURF6
GoPubMedSURF6
iHOPSURF6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:08 CET 2017

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