Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SUSD1 (sushi domain containing 1)

Identity

Alias_symbol (synonym)DKFZP761E1824
Other alias-
HGNC (Hugo) SUSD1
LocusID (NCBI) 64420
Atlas_Id 53053
Location 9q31.3  [Link to chromosome band 9q31]
Location_base_pair Starts at 114803061 and ends at 114937577 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SUSD1 (9q31.3) / PTBP3 (9q32)SUSD1 (9q31.3) / UGCG (9q31.3)ZNF618 (9q32) / SUSD1 (9q31.3)
SUSD1 9q31.3 / PTBP3 9q32SUSD1 9q31.3 / UGCG 9q31.3ZNF618 9q32 / SUSD1 9q31.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUSD1   25413
Cards
Entrez_Gene (NCBI)SUSD1  64420  sushi domain containing 1
Aliases
GeneCards (Weizmann)SUSD1
Ensembl hg19 (Hinxton)ENSG00000106868 [Gene_View]  chr9:114803061-114937577 [Contig_View]  SUSD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106868 [Gene_View]  chr9:114803061-114937577 [Contig_View]  SUSD1 [Vega]
ICGC DataPortalENSG00000106868
TCGA cBioPortalSUSD1
AceView (NCBI)SUSD1
Genatlas (Paris)SUSD1
WikiGenes64420
SOURCE (Princeton)SUSD1
Genetics Home Reference (NIH)SUSD1
Genomic and cartography
GoldenPath hg19 (UCSC)SUSD1  -     chr9:114803061-114937577 -  9q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SUSD1  -     9q31.3   [Description]    (hg38-Dec_2013)
EnsemblSUSD1 - 9q31.3 [CytoView hg19]  SUSD1 - 9q31.3 [CytoView hg38]
Mapping of homologs : NCBISUSD1 [Mapview hg19]  SUSD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025486 AK056704 AK292868 AL137432 AY358746
RefSeq transcript (Entrez)NM_001282640 NM_001282643 NM_022486
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)SUSD1
Cluster EST : UnigeneHs.494827 [ NCBI ]
CGAP (NCI)Hs.494827
Alternative Splicing GalleryENSG00000106868
Gene ExpressionSUSD1 [ NCBI-GEO ]   SUSD1 [ EBI - ARRAY_EXPRESS ]   SUSD1 [ SEEK ]   SUSD1 [ MEM ]
Gene Expression Viewer (FireBrowse)SUSD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64420
GTEX Portal (Tissue expression)SUSD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWL2
Splice isoforms : SwissVarQ6UWL2
PhosPhoSitePlusQ6UWL2
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)    SUSHI (PS50923)   
Domains : Interpro (EBI)EGF-like_Ca-bd_dom    EGF-like_CS    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    GFP-like    Growth_fac_rcpt_    Sushi_SCR_CCP_dom   
Domain families : Pfam (Sanger)EGF_CA (PF07645)    Sushi (PF00084)   
Domain families : Pfam (NCBI)pfam07645    pfam00084   
Domain families : Smart (EMBL)CCP (SM00032)  EGF (SM00181)  EGF_CA (SM00179)  
Conserved Domain (NCBI)SUSD1
DMDM Disease mutations64420
Blocks (Seattle)SUSD1
SuperfamilyQ6UWL2
Human Protein AtlasENSG00000106868
Peptide AtlasQ6UWL2
HPRD15452
IPIIPI00748358   IPI00478989   IPI00844446   IPI01025060   IPI00646061   IPI00977675   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWL2
IntAct (EBI)Q6UWL2
FunCoupENSG00000106868
BioGRIDSUSD1
STRING (EMBL)SUSD1
ZODIACSUSD1
Ontologies - Pathways
QuickGOQ6UWL2
Ontology : AmiGOcalcium ion binding  integral component of membrane  
Ontology : EGO-EBIcalcium ion binding  integral component of membrane  
NDEx NetworkSUSD1
Atlas of Cancer Signalling NetworkSUSD1
Wikipedia pathwaysSUSD1
Orthology - Evolution
OrthoDB64420
GeneTree (enSembl)ENSG00000106868
Phylogenetic Trees/Animal Genes : TreeFamSUSD1
HOVERGENQ6UWL2
HOGENOMQ6UWL2
Homologs : HomoloGeneSUSD1
Homology/Alignments : Family Browser (UCSC)SUSD1
Gene fusions - Rearrangements
Fusion : MitelmanSUSD1/UGCG [9q31.3/9q31.3]  
Fusion: TCGASUSD1 9q31.3 UGCG 9q31.3 BRCA
Fusion: TCGAZNF618 9q32 SUSD1 9q31.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUSD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUSD1
dbVarSUSD1
ClinVarSUSD1
1000_GenomesSUSD1 
Exome Variant ServerSUSD1
ExAC (Exome Aggregation Consortium)SUSD1 (select the gene name)
Genetic variants : HAPMAP64420
Genomic Variants (DGV)SUSD1 [DGVbeta]
DECIPHER (Syndromes)9:114803061-114937577  ENSG00000106868
CONAN: Copy Number AnalysisSUSD1 
Mutations
ICGC Data PortalSUSD1 
TCGA Data PortalSUSD1 
Broad Tumor PortalSUSD1
OASIS PortalSUSD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUSD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUSD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUSD1
DgiDB (Drug Gene Interaction Database)SUSD1
DoCM (Curated mutations)SUSD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUSD1 (select a term)
intoGenSUSD1
Cancer3DSUSD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSUSD1
Genetic Testing Registry SUSD1
NextProtQ6UWL2 [Medical]
TSGene64420
GENETestsSUSD1
Huge Navigator SUSD1 [HugePedia]
snp3D : Map Gene to Disease64420
BioCentury BCIQSUSD1
ClinGenSUSD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64420
Chemical/Pharm GKB GenePA134935587
Clinical trialSUSD1
Miscellaneous
canSAR (ICR)SUSD1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUSD1
EVEXSUSD1
GoPubMedSUSD1
iHOPSUSD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:29:57 CET 2017

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