Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SUSD2 (sushi domain containing 2)

Identity

Alias_symbol (synonym)BK65A6.2
FLJ22778
Other alias
HGNC (Hugo) SUSD2
LocusID (NCBI) 56241
Atlas_Id 53553
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 24181476 and ends at 24189106 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUSD2   30667
Cards
Entrez_Gene (NCBI)SUSD2  56241  sushi domain containing 2
AliasesBK65A6.2
GeneCards (Weizmann)SUSD2
Ensembl hg19 (Hinxton)ENSG00000099994 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099994 [Gene_View]  chr22:24181476-24189106 [Contig_View]  SUSD2 [Vega]
ICGC DataPortalENSG00000099994
TCGA cBioPortalSUSD2
AceView (NCBI)SUSD2
Genatlas (Paris)SUSD2
WikiGenes56241
SOURCE (Princeton)SUSD2
Genetics Home Reference (NIH)SUSD2
Genomic and cartography
GoldenPath hg38 (UCSC)SUSD2  -     chr22:24181476-24189106 +  22q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUSD2  -     22q11.23   [Description]    (hg19-Feb_2009)
EnsemblSUSD2 - 22q11.23 [CytoView hg19]  SUSD2 - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBISUSD2 [Mapview hg19]  SUSD2 [Mapview hg38]
OMIM615825   
Gene and transcription
Genbank (Entrez)AK026431 AK126105 BC033107 BI822588 HM005503
RefSeq transcript (Entrez)NM_019601
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUSD2
Cluster EST : UnigeneHs.131819 [ NCBI ]
CGAP (NCI)Hs.131819
Alternative Splicing GalleryENSG00000099994
Gene ExpressionSUSD2 [ NCBI-GEO ]   SUSD2 [ EBI - ARRAY_EXPRESS ]   SUSD2 [ SEEK ]   SUSD2 [ MEM ]
Gene Expression Viewer (FireBrowse)SUSD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56241
GTEX Portal (Tissue expression)SUSD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGT4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGT4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGT4
Splice isoforms : SwissVarQ9UGT4
PhosPhoSitePlusQ9UGT4
Domaine pattern : Prosite (Expaxy)AMOP (PS50856)    SMB_1 (PS00524)    SMB_2 (PS50958)    SUSHI (PS50923)    VWFD (PS51233)   
Domains : Interpro (EBI)AMOP_dom    Somatomedin_B_dom    Sushi_SCR_CCP_dom    VWF_type-D   
Domain families : Pfam (Sanger)AMOP (PF03782)    Somatomedin_B (PF01033)    Sushi (PF00084)    VWD (PF00094)   
Domain families : Pfam (NCBI)pfam03782    pfam01033    pfam00084    pfam00094   
Domain families : Smart (EMBL)AMOP (SM00723)  CCP (SM00032)  VWD (SM00216)  
Conserved Domain (NCBI)SUSD2
DMDM Disease mutations56241
Blocks (Seattle)SUSD2
SuperfamilyQ9UGT4
Human Protein AtlasENSG00000099994
Peptide AtlasQ9UGT4
HPRD18132
IPIIPI00021302   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGT4
IntAct (EBI)Q9UGT4
FunCoupENSG00000099994
BioGRIDSUSD2
STRING (EMBL)SUSD2
ZODIACSUSD2
Ontologies - Pathways
QuickGOQ9UGT4
Ontology : AmiGOscavenger receptor activity  protein binding  plasma membrane  receptor-mediated endocytosis  immune response  integral component of membrane  polysaccharide binding  negative regulation of cell division  extracellular exosome  negative regulation of cell cycle G1/S phase transition  
Ontology : EGO-EBIscavenger receptor activity  protein binding  plasma membrane  receptor-mediated endocytosis  immune response  integral component of membrane  polysaccharide binding  negative regulation of cell division  extracellular exosome  negative regulation of cell cycle G1/S phase transition  
NDEx NetworkSUSD2
Atlas of Cancer Signalling NetworkSUSD2
Wikipedia pathwaysSUSD2
Orthology - Evolution
OrthoDB56241
GeneTree (enSembl)ENSG00000099994
Phylogenetic Trees/Animal Genes : TreeFamSUSD2
HOVERGENQ9UGT4
HOGENOMQ9UGT4
Homologs : HomoloGeneSUSD2
Homology/Alignments : Family Browser (UCSC)SUSD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUSD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUSD2
dbVarSUSD2
ClinVarSUSD2
1000_GenomesSUSD2 
Exome Variant ServerSUSD2
ExAC (Exome Aggregation Consortium)SUSD2 (select the gene name)
Genetic variants : HAPMAP56241
Genomic Variants (DGV)SUSD2 [DGVbeta]
DECIPHERSUSD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUSD2 
Mutations
ICGC Data PortalSUSD2 
TCGA Data PortalSUSD2 
Broad Tumor PortalSUSD2
OASIS PortalSUSD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUSD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUSD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUSD2
DgiDB (Drug Gene Interaction Database)SUSD2
DoCM (Curated mutations)SUSD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUSD2 (select a term)
intoGenSUSD2
Cancer3DSUSD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615825   
Orphanet
MedgenSUSD2
Genetic Testing Registry SUSD2
NextProtQ9UGT4 [Medical]
TSGene56241
GENETestsSUSD2
Target ValidationSUSD2
Huge Navigator SUSD2 [HugePedia]
snp3D : Map Gene to Disease56241
BioCentury BCIQSUSD2
ClinGenSUSD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56241
Chemical/Pharm GKB GenePA134942464
Clinical trialSUSD2
Miscellaneous
canSAR (ICR)SUSD2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUSD2
EVEXSUSD2
GoPubMedSUSD2
iHOPSUSD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:33:48 CEST 2017

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