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SUSD3 (sushi domain containing 3)

Identity

Alias_symbol (synonym)MGC26847
Other alias-
HGNC (Hugo) SUSD3
LocusID (NCBI) 203328
Atlas_Id 55223
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 93058688 and ends at 93085136 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SUSD3 (9q22.31) / SUSD3 (9q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUSD3   28391
Cards
Entrez_Gene (NCBI)SUSD3  203328  sushi domain containing 3
Aliases
GeneCards (Weizmann)SUSD3
Ensembl hg19 (Hinxton)ENSG00000157303 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157303 [Gene_View]  chr9:93058688-93085136 [Contig_View]  SUSD3 [Vega]
ICGC DataPortalENSG00000157303
TCGA cBioPortalSUSD3
AceView (NCBI)SUSD3
Genatlas (Paris)SUSD3
WikiGenes203328
SOURCE (Princeton)SUSD3
Genetics Home Reference (NIH)SUSD3
Genomic and cartography
GoldenPath hg38 (UCSC)SUSD3  -     chr9:93058688-93085136 +  9q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUSD3  -     9q22.31   [Description]    (hg19-Feb_2009)
EnsemblSUSD3 - 9q22.31 [CytoView hg19]  SUSD3 - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBISUSD3 [Mapview hg19]  SUSD3 [Mapview hg38]
OMIM616429   
Gene and transcription
Genbank (Entrez)AA490088 AI452970 AK128289 AL137623 AY358190
RefSeq transcript (Entrez)NM_001287005 NM_001287006 NM_001287007 NM_001287008 NM_145006
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUSD3
Cluster EST : UnigeneHs.88417 [ NCBI ]
CGAP (NCI)Hs.88417
Alternative Splicing GalleryENSG00000157303
Gene ExpressionSUSD3 [ NCBI-GEO ]   SUSD3 [ EBI - ARRAY_EXPRESS ]   SUSD3 [ SEEK ]   SUSD3 [ MEM ]
Gene Expression Viewer (FireBrowse)SUSD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203328
GTEX Portal (Tissue expression)SUSD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96L08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96L08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96L08
Splice isoforms : SwissVarQ96L08
PhosPhoSitePlusQ96L08
Domaine pattern : Prosite (Expaxy)SUSHI (PS50923)   
Domains : Interpro (EBI)Sushi_SCR_CCP_dom   
Domain families : Pfam (Sanger)Sushi (PF00084)   
Domain families : Pfam (NCBI)pfam00084   
Domain families : Smart (EMBL)CCP (SM00032)  
Conserved Domain (NCBI)SUSD3
DMDM Disease mutations203328
Blocks (Seattle)SUSD3
SuperfamilyQ96L08
Human Protein AtlasENSG00000157303
Peptide AtlasQ96L08
HPRD15453
IPIIPI00432740   IPI00654598   IPI00787072   
Protein Interaction databases
DIP (DOE-UCLA)Q96L08
IntAct (EBI)Q96L08
FunCoupENSG00000157303
BioGRIDSUSD3
STRING (EMBL)SUSD3
ZODIACSUSD3
Ontologies - Pathways
QuickGOQ96L08
Ontology : AmiGOplasma membrane  integral component of membrane  
Ontology : EGO-EBIplasma membrane  integral component of membrane  
NDEx NetworkSUSD3
Atlas of Cancer Signalling NetworkSUSD3
Wikipedia pathwaysSUSD3
Orthology - Evolution
OrthoDB203328
GeneTree (enSembl)ENSG00000157303
Phylogenetic Trees/Animal Genes : TreeFamSUSD3
HOVERGENQ96L08
HOGENOMQ96L08
Homologs : HomoloGeneSUSD3
Homology/Alignments : Family Browser (UCSC)SUSD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUSD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUSD3
dbVarSUSD3
ClinVarSUSD3
1000_GenomesSUSD3 
Exome Variant ServerSUSD3
ExAC (Exome Aggregation Consortium)SUSD3 (select the gene name)
Genetic variants : HAPMAP203328
Genomic Variants (DGV)SUSD3 [DGVbeta]
DECIPHERSUSD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUSD3 
Mutations
ICGC Data PortalSUSD3 
TCGA Data PortalSUSD3 
Broad Tumor PortalSUSD3
OASIS PortalSUSD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUSD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUSD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUSD3
DgiDB (Drug Gene Interaction Database)SUSD3
DoCM (Curated mutations)SUSD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUSD3 (select a term)
intoGenSUSD3
Cancer3DSUSD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616429   
Orphanet
MedgenSUSD3
Genetic Testing Registry SUSD3
NextProtQ96L08 [Medical]
TSGene203328
GENETestsSUSD3
Target ValidationSUSD3
Huge Navigator SUSD3 [HugePedia]
snp3D : Map Gene to Disease203328
BioCentury BCIQSUSD3
ClinGenSUSD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203328
Chemical/Pharm GKB GenePA128394766
Clinical trialSUSD3
Miscellaneous
canSAR (ICR)SUSD3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUSD3
EVEXSUSD3
GoPubMedSUSD3
iHOPSUSD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:16:10 CEST 2017

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