Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SUSD4 (sushi domain containing 4)

Identity

Alias_symbol (synonym)FLJ10052
Other aliasPRO222
HGNC (Hugo) SUSD4
LocusID (NCBI) 55061
Atlas_Id 55725
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 223220819 and ends at 223364202 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CENPF (1q41) / SUSD4 (1q41)FNIP1 (5q31.1) / SUSD4 (1q41)SUSD4 (1q41) / CRCT1 (1q21.3)
SUSD4 (1q41) / NVL (1q42.11)SUSD4 (1q41) / RYR2 (1q43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(1;1)(q41;q42) SUSD4/NVL
t(1;5)(q41;q31) FNIP1/SUSD4


External links

Nomenclature
HGNC (Hugo)SUSD4   25470
Cards
Entrez_Gene (NCBI)SUSD4  55061  sushi domain containing 4
AliasesPRO222
GeneCards (Weizmann)SUSD4
Ensembl hg19 (Hinxton)ENSG00000143502 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143502 [Gene_View]  ENSG00000143502 [Sequence]  chr1:223220819-223364202 [Contig_View]  SUSD4 [Vega]
ICGC DataPortalENSG00000143502
TCGA cBioPortalSUSD4
AceView (NCBI)SUSD4
Genatlas (Paris)SUSD4
WikiGenes55061
SOURCE (Princeton)SUSD4
Genetics Home Reference (NIH)SUSD4
Genomic and cartography
GoldenPath hg38 (UCSC)SUSD4  -     chr1:223220819-223364202 -  1q41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUSD4  -     1q41   [Description]    (hg19-Feb_2009)
GoldenPathSUSD4 - 1q41 [CytoView hg19]  SUSD4 - 1q41 [CytoView hg38]
ImmunoBaseENSG00000143502
Mapping of homologs : NCBISUSD4 [Mapview hg19]  SUSD4 [Mapview hg38]
OMIM615827   
Gene and transcription
Genbank (Entrez)AK000914 AK096265 AK295553 AK296923 AY358495
RefSeq transcript (Entrez)NM_001037175 NM_017982
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUSD4
Cluster EST : UnigeneHs.497841 [ NCBI ]
CGAP (NCI)Hs.497841
Alternative Splicing GalleryENSG00000143502
Gene ExpressionSUSD4 [ NCBI-GEO ]   SUSD4 [ EBI - ARRAY_EXPRESS ]   SUSD4 [ SEEK ]   SUSD4 [ MEM ]
Gene Expression Viewer (FireBrowse)SUSD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55061
GTEX Portal (Tissue expression)SUSD4
Human Protein AtlasENSG00000143502-SUSD4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VX71   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VX71  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VX71
Splice isoforms : SwissVarQ5VX71
PhosPhoSitePlusQ5VX71
Domaine pattern : Prosite (Expaxy)SUSHI (PS50923)   
Domains : Interpro (EBI)Sushi/SCR/CCP_sf    Sushi_SCR_CCP_dom   
Domain families : Pfam (Sanger)Sushi (PF00084)   
Domain families : Pfam (NCBI)pfam00084   
Domain families : Smart (EMBL)CCP (SM00032)  
Conserved Domain (NCBI)SUSD4
DMDM Disease mutations55061
Blocks (Seattle)SUSD4
SuperfamilyQ5VX71
Human Protein Atlas [tissue]ENSG00000143502-SUSD4 [tissue]
Peptide AtlasQ5VX71
HPRD07641
IPIIPI00747395   IPI00432393   IPI00015672   IPI00037168   IPI00942920   IPI00477085   
Protein Interaction databases
DIP (DOE-UCLA)Q5VX71
IntAct (EBI)Q5VX71
FunCoupENSG00000143502
BioGRIDSUSD4
STRING (EMBL)SUSD4
ZODIACSUSD4
Ontologies - Pathways
QuickGOQ5VX71
Ontology : AmiGOextracellular region  complement activation, classical pathway  integral component of membrane  regulation of complement activation  innate immune response  
Ontology : EGO-EBIextracellular region  complement activation, classical pathway  integral component of membrane  regulation of complement activation  innate immune response  
NDEx NetworkSUSD4
Atlas of Cancer Signalling NetworkSUSD4
Wikipedia pathwaysSUSD4
Orthology - Evolution
OrthoDB55061
GeneTree (enSembl)ENSG00000143502
Phylogenetic Trees/Animal Genes : TreeFamSUSD4
HOGENOMQ5VX71
Homologs : HomoloGeneSUSD4
Homology/Alignments : Family Browser (UCSC)SUSD4
Gene fusions - Rearrangements
Fusion : QuiverSUSD4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUSD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUSD4
dbVarSUSD4
ClinVarSUSD4
1000_GenomesSUSD4 
Exome Variant ServerSUSD4
ExAC (Exome Aggregation Consortium)ENSG00000143502
GNOMAD BrowserENSG00000143502
Varsome BrowserSUSD4
Genetic variants : HAPMAP55061
Genomic Variants (DGV)SUSD4 [DGVbeta]
DECIPHERSUSD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUSD4 
Mutations
ICGC Data PortalSUSD4 
TCGA Data PortalSUSD4 
Broad Tumor PortalSUSD4
OASIS PortalSUSD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUSD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUSD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUSD4
DgiDB (Drug Gene Interaction Database)SUSD4
DoCM (Curated mutations)SUSD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUSD4 (select a term)
intoGenSUSD4
Cancer3DSUSD4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615827   
Orphanet
DisGeNETSUSD4
MedgenSUSD4
Genetic Testing Registry SUSD4
NextProtQ5VX71 [Medical]
TSGene55061
GENETestsSUSD4
Target ValidationSUSD4
Huge Navigator SUSD4 [HugePedia]
snp3D : Map Gene to Disease55061
BioCentury BCIQSUSD4
ClinGenSUSD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55061
Chemical/Pharm GKB GenePA142670855
Clinical trialSUSD4
Miscellaneous
canSAR (ICR)SUSD4 (select the gene name)
DataMed IndexSUSD4
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUSD4
EVEXSUSD4
GoPubMedSUSD4
iHOPSUSD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 8 11:43:35 CEST 2019

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