Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SUSD5 (sushi domain containing 5)

Identity

Alias_symbol (synonym)KIAA0527
Other alias-
HGNC (Hugo) SUSD5
LocusID (NCBI) 26032
Atlas_Id 74387
Location 3p22.3  [Link to chromosome band 3p22]
Location_base_pair Starts at 33150045 and ends at 33219215 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SUSD5   29061
Cards
Entrez_Gene (NCBI)SUSD5  26032  sushi domain containing 5
Aliases
GeneCards (Weizmann)SUSD5
Ensembl hg19 (Hinxton)ENSG00000173705 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173705 [Gene_View]  chr3:33150045-33219215 [Contig_View]  SUSD5 [Vega]
ICGC DataPortalENSG00000173705
TCGA cBioPortalSUSD5
AceView (NCBI)SUSD5
Genatlas (Paris)SUSD5
WikiGenes26032
SOURCE (Princeton)SUSD5
Genetics Home Reference (NIH)SUSD5
Genomic and cartography
GoldenPath hg38 (UCSC)SUSD5  -     chr3:33150045-33219215 -  3p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SUSD5  -     3p22.3   [Description]    (hg19-Feb_2009)
EnsemblSUSD5 - 3p22.3 [CytoView hg19]  SUSD5 - 3p22.3 [CytoView hg38]
Mapping of homologs : NCBISUSD5 [Mapview hg19]  SUSD5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB011099 AK295869
RefSeq transcript (Entrez)NM_015551
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SUSD5
Cluster EST : UnigeneHs.196647 [ NCBI ]
CGAP (NCI)Hs.196647
Alternative Splicing GalleryENSG00000173705
Gene ExpressionSUSD5 [ NCBI-GEO ]   SUSD5 [ EBI - ARRAY_EXPRESS ]   SUSD5 [ SEEK ]   SUSD5 [ MEM ]
Gene Expression Viewer (FireBrowse)SUSD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26032
GTEX Portal (Tissue expression)SUSD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60279   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60279  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60279
Splice isoforms : SwissVarO60279
PhosPhoSitePlusO60279
Domaine pattern : Prosite (Expaxy)LINK_2 (PS50963)    SUSHI (PS50923)   
Domains : Interpro (EBI)C-type_lectin-like/link    CTDL_fold    Link_dom    Sushi_SCR_CCP_dom   
Domain families : Pfam (Sanger)Xlink (PF00193)   
Domain families : Pfam (NCBI)pfam00193   
Domain families : Smart (EMBL)LINK (SM00445)  
Conserved Domain (NCBI)SUSD5
DMDM Disease mutations26032
Blocks (Seattle)SUSD5
SuperfamilyO60279
Human Protein AtlasENSG00000173705
Peptide AtlasO60279
IPIIPI00297224   IPI00927702   
Protein Interaction databases
DIP (DOE-UCLA)O60279
IntAct (EBI)O60279
FunCoupENSG00000173705
BioGRIDSUSD5
STRING (EMBL)SUSD5
ZODIACSUSD5
Ontologies - Pathways
QuickGOO60279
Ontology : AmiGOhyaluronic acid binding  cell adhesion  Notch signaling pathway  integral component of membrane  
Ontology : EGO-EBIhyaluronic acid binding  cell adhesion  Notch signaling pathway  integral component of membrane  
NDEx NetworkSUSD5
Atlas of Cancer Signalling NetworkSUSD5
Wikipedia pathwaysSUSD5
Orthology - Evolution
OrthoDB26032
GeneTree (enSembl)ENSG00000173705
Phylogenetic Trees/Animal Genes : TreeFamSUSD5
HOVERGENO60279
HOGENOMO60279
Homologs : HomoloGeneSUSD5
Homology/Alignments : Family Browser (UCSC)SUSD5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSUSD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SUSD5
dbVarSUSD5
ClinVarSUSD5
1000_GenomesSUSD5 
Exome Variant ServerSUSD5
ExAC (Exome Aggregation Consortium)SUSD5 (select the gene name)
Genetic variants : HAPMAP26032
Genomic Variants (DGV)SUSD5 [DGVbeta]
DECIPHERSUSD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSUSD5 
Mutations
ICGC Data PortalSUSD5 
TCGA Data PortalSUSD5 
Broad Tumor PortalSUSD5
OASIS PortalSUSD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSUSD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSUSD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SUSD5
DgiDB (Drug Gene Interaction Database)SUSD5
DoCM (Curated mutations)SUSD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SUSD5 (select a term)
intoGenSUSD5
Cancer3DSUSD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSUSD5
Genetic Testing Registry SUSD5
NextProtO60279 [Medical]
TSGene26032
GENETestsSUSD5
Target ValidationSUSD5
Huge Navigator SUSD5 [HugePedia]
snp3D : Map Gene to Disease26032
BioCentury BCIQSUSD5
ClinGenSUSD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26032
Chemical/Pharm GKB GenePA143485627
Clinical trialSUSD5
Miscellaneous
canSAR (ICR)SUSD5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSUSD5
EVEXSUSD5
GoPubMedSUSD5
iHOPSUSD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:44:35 CEST 2017

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