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SUV420H1 (suppressor of variegation 4-20 homolog 1 (Drosophila))

Identity

Other namesCGI85
KMT5B
HGNC (Hugo) SUV420H1
LocusID (NCBI) 51111
Location 11q13.2
Location_base_pair Starts at 67933186 and ends at 67980784 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SUV420H1   24283
Entrez_Gene (NCBI)SUV420H1  51111  suppressor of variegation 4-20 homolog 1 (Drosophila)
Cards
GeneCards (Weizmann)SUV420H1
Ensembl (Hinxton)ENSG00000110066 [Gene_View]  chr11:67933186-67980784 [Contig_View]  SUV420H1 [Vega]
AceView (NCBI)SUV420H1
Genatlas (Paris)SUV420H1
SOURCE (Stanford)NM_016028 NM_017635
Genomic and cartography
GoldenPath (UCSC)SUV420H1  -  11q13.2   chr11:67933186-67980784 -  11q13.2   [Description]    (hg19-Feb_2009)
EnsemblSUV420H1 - 11q13.2 [CytoView]
Mapping of homologs : NCBISUV420H1 [Mapview]
OMIM610881   
Gene and transcription
Genbank (Entrez)AF151843 AF264782 AI659791 AK000046 AK025183
RefSeq transcript (SRS)NM_016028 NM_017635
RefSeq transcript (Entrez)NM_016028 NM_017635
RefSeq genomic (SRS)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838025 NW_004078072
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838025 NW_004078072
Consensus coding sequences : CCDS (NCBI)SUV420H1
Cluster EST : UnigeneHs.632120 [ SRS ] Hs.632120 [ NCBI ]
CGAP (NCI)Hs.632120
Alternative Splicing : Fast-db (Paris)GSHG0005964
Alternative Splicing GalleryENSG00000110066
Gene ExpressionSUV420H1 [ NCBI-GEO ]   SUV420H1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4FZB7 (SRS) Q4FZB7 (Uniprot)
NextProtQ4FZB7
With graphics : InterProQ4FZB7
Splice isoforms : SwissVarQ4FZB7(Swissvar)
Domaine pattern : Prosite (SRS)SET (PS50280)   
Domaine pattern : Prosite (Expaxy)SET (PS50280)   
Domains : Interpro (SRS)Hist-Lys_N-MTase_Suvar4-20    SET_dom   
Domains : Interpro (EBI)Hist-Lys_N-MTase_Suvar4-20    SET_dom   
Related proteins : CluSTrQ4FZB7
Domain families : Pfam (SRS)SET (PF00856)   
Domain families : Pfam (Sanger)SET (PF00856)   
Domain families : Pfam (NCBI)pfam00856   
Domain families : Smart (EMBL)SET (SM00317)  
DMDM51111
Blocks (Seattle)Q4FZB7
PDB (SRS)3S8P   
PDB (PDBSum)3S8P   
PDB (IMB)3S8P   
PDB (RSDB)3S8P   
Human Protein AtlasENSG00000110066
HPRD11616
IPIIPI00329708   IPI00455177   IPI00879841   IPI00878261   IPI00878622   IPI00844368   IPI00974435   IPI00878771   IPI00879308   IPI00385854   IPI01013656   
Protein Interaction databases
DIP (DOE-UCLA)Q4FZB7
IntAct (EBI)Q4FZB7
FunCoupENSG00000110066
REACTOMESUV420H1
Protein Interaction Database51111
BioGRIDSUV420H1
InParanoidQ4FZB7
Interologous Interaction database Q4FZB7
IntegromeDBSUV420H1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SUV420H1
SNP (GeneSNP Utah)SUV420H1
SNP : HGBaseSUV420H1
Genetic variants : HAPMAPSUV420H1
Somatic Mutations in Cancer : COSMICSUV420H1 
CONAN: Copy Number AnalysisSUV420H1 
Mutations and Diseases : HGMDSUV420H1
OMIM610881   
GENETests610881   
Disease Genetic AssociationSUV420H1
Huge Navigator SUV420H1 [HugePedia]  SUV420H1 [HugeCancerGEM]
Genomic VariantsSUV420H1  SUV420H1 [DGVbeta]
snp3D : Map Gene to Disease51111
General knowledge
Homologs : HomoloGeneSUV420H1
Homology/Alignments : Family Browser (UCSC)SUV420H1
Phylogenetic Trees/Animal Genes : TreeFamSUV420H1
Catalytic activity : Enzyme2.1.1.43 [ Enzyme-Expasy ]   2.1.1.43 [ Enzyme-SRS ]   2.1.1.43 [ IntEnz-EBI ]   2.1.1.43 [ BRENDA ]   2.1.1.43 [ KEGG ]   
Chemical/Protein Interactions : CTD51111
Chemical/Pharm GKB GenePA134958369
Clinical trialSUV420H1
Cancer Resource (Charite)ENSG00000110066
Ontology : AmiGOcondensed nuclear chromosome, centromeric region  transcription, DNA-dependent  regulation of transcription, DNA-dependent  histone-lysine N-methyltransferase activity  histone H4-K20 trimethylation  histone methyltransferase activity (H4-K20 specific)  
Ontology : EGO-EBIcondensed nuclear chromosome, centromeric region  transcription, DNA-dependent  regulation of transcription, DNA-dependent  histone-lysine N-methyltransferase activity  histone H4-K20 trimethylation  histone methyltransferase activity (H4-K20 specific)  
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
PubGeneSUV420H1
iHOPSUV420H1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:45:41 CEST 2013

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