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SV2B (synaptic vesicle glycoprotein 2B)

Identity

Alias_symbol (synonym)KIAA0735
HsT19680
Other alias
HGNC (Hugo) SV2B
LocusID (NCBI) 9899
Atlas_Id 54677
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 91643182 and ends at 91844539 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GABBR1 (6p22.1) / SV2B (15q26.1)RUNX1 (21q22.12) / SV2B (15q26.1)ZSCAN23 (6p22.1) / SV2B (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SV2B   16874
Cards
Entrez_Gene (NCBI)SV2B  9899  synaptic vesicle glycoprotein 2B
AliasesHsT19680
GeneCards (Weizmann)SV2B
Ensembl hg19 (Hinxton)ENSG00000185518 [Gene_View]  chr15:91643182-91844539 [Contig_View]  SV2B [Vega]
Ensembl hg38 (Hinxton)ENSG00000185518 [Gene_View]  chr15:91643182-91844539 [Contig_View]  SV2B [Vega]
ICGC DataPortalENSG00000185518
TCGA cBioPortalSV2B
AceView (NCBI)SV2B
Genatlas (Paris)SV2B
WikiGenes9899
SOURCE (Princeton)SV2B
Genetics Home Reference (NIH)SV2B
Genomic and cartography
GoldenPath hg19 (UCSC)SV2B  -     chr15:91643182-91844539 +  15q26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SV2B  -     15q26.1   [Description]    (hg38-Dec_2013)
EnsemblSV2B - 15q26.1 [CytoView hg19]  SV2B - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBISV2B [Mapview hg19]  SV2B [Mapview hg38]
OMIM185861   
Gene and transcription
Genbank (Entrez)AB018278 AF052188 AK124722 AK294902 AL109781
RefSeq transcript (Entrez)NM_001167580 NM_014848
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929399
Consensus coding sequences : CCDS (NCBI)SV2B
Cluster EST : UnigeneHs.21754 [ NCBI ]
CGAP (NCI)Hs.21754
Alternative Splicing GalleryENSG00000185518
Gene ExpressionSV2B [ NCBI-GEO ]   SV2B [ EBI - ARRAY_EXPRESS ]   SV2B [ SEEK ]   SV2B [ MEM ]
Gene Expression Viewer (FireBrowse)SV2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9899
GTEX Portal (Tissue expression)SV2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L1I2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L1I2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L1I2
Splice isoforms : SwissVarQ7L1I2
PhosPhoSitePlusQ7L1I2
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)5peptide_repeat    MFS    MFS_dom    MFS_sugar_transport_like    Sugar_transporter_CS    SV2   
Domain families : Pfam (Sanger)MFS_1 (PF07690)    Pentapeptide_4 (PF13599)    Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam07690    pfam13599    pfam00083   
Conserved Domain (NCBI)SV2B
DMDM Disease mutations9899
Blocks (Seattle)SV2B
SuperfamilyQ7L1I2
Human Protein AtlasENSG00000185518
Peptide AtlasQ7L1I2
HPRD11765
IPIIPI00006631   IPI00954030   
Protein Interaction databases
DIP (DOE-UCLA)Q7L1I2
IntAct (EBI)Q7L1I2
FunCoupENSG00000185518
BioGRIDSV2B
STRING (EMBL)SV2B
ZODIACSV2B
Ontologies - Pathways
QuickGOQ7L1I2
Ontology : AmiGOacrosomal vesicle  protein binding  plasma membrane  neurotransmitter transport  synaptic vesicle  synaptic vesicle  membrane  integral component of membrane  transmembrane transporter activity  cell junction  synaptic vesicle membrane  transmembrane transport  
Ontology : EGO-EBIacrosomal vesicle  protein binding  plasma membrane  neurotransmitter transport  synaptic vesicle  synaptic vesicle  membrane  integral component of membrane  transmembrane transporter activity  cell junction  synaptic vesicle membrane  transmembrane transport  
Pathways : KEGGECM-receptor interaction   
NDEx NetworkSV2B
Atlas of Cancer Signalling NetworkSV2B
Wikipedia pathwaysSV2B
Orthology - Evolution
OrthoDB9899
GeneTree (enSembl)ENSG00000185518
Phylogenetic Trees/Animal Genes : TreeFamSV2B
HOVERGENQ7L1I2
HOGENOMQ7L1I2
Homologs : HomoloGeneSV2B
Homology/Alignments : Family Browser (UCSC)SV2B
Gene fusions - Rearrangements
Fusion : MitelmanRUNX1/SV2B [21q22.12/15q26.1]  [t(15;21)(q26;q22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSV2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SV2B
dbVarSV2B
ClinVarSV2B
1000_GenomesSV2B 
Exome Variant ServerSV2B
ExAC (Exome Aggregation Consortium)SV2B (select the gene name)
Genetic variants : HAPMAP9899
Genomic Variants (DGV)SV2B [DGVbeta]
DECIPHER (Syndromes)15:91643182-91844539  ENSG00000185518
CONAN: Copy Number AnalysisSV2B 
Mutations
ICGC Data PortalSV2B 
TCGA Data PortalSV2B 
Broad Tumor PortalSV2B
OASIS PortalSV2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSV2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSV2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SV2B
DgiDB (Drug Gene Interaction Database)SV2B
DoCM (Curated mutations)SV2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SV2B (select a term)
intoGenSV2B
Cancer3DSV2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM185861   
Orphanet
MedgenSV2B
Genetic Testing Registry SV2B
NextProtQ7L1I2 [Medical]
TSGene9899
GENETestsSV2B
Huge Navigator SV2B [HugePedia]
snp3D : Map Gene to Disease9899
BioCentury BCIQSV2B
ClinGenSV2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9899
Chemical/Pharm GKB GenePA134930999
Clinical trialSV2B
Miscellaneous
canSAR (ICR)SV2B (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSV2B
EVEXSV2B
GoPubMedSV2B
iHOPSV2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:21:32 CEST 2017

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