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SVBP (small vasohibin binding protein)

Identity

Alias_namesCCDC23
coiled-coil domain containing 23
Alias_symbol (synonym)MGC45441
Other alias
HGNC (Hugo) SVBP
LocusID (NCBI) 374969
Atlas_Id 55250
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 42807052 and ends at 42817388 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FOXJ3 (1p34.2) / SVBP (1p34.2)SVBP (1p34.2) / CLCA2 (1p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SVBP   29204
Cards
Entrez_Gene (NCBI)SVBP  374969  small vasohibin binding protein
AliasesCCDC23
GeneCards (Weizmann)SVBP
Ensembl hg19 (Hinxton)ENSG00000177868 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177868 [Gene_View]  chr1:42807052-42817388 [Contig_View]  SVBP [Vega]
ICGC DataPortalENSG00000177868
TCGA cBioPortalSVBP
AceView (NCBI)SVBP
Genatlas (Paris)SVBP
WikiGenes374969
SOURCE (Princeton)SVBP
Genetics Home Reference (NIH)SVBP
Genomic and cartography
GoldenPath hg38 (UCSC)SVBP  -     chr1:42807052-42817388 -  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SVBP  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblSVBP - 1p34.2 [CytoView hg19]  SVBP - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBISVBP [Mapview hg19]  SVBP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK291356 BC029427 BM675639 BQ712089
RefSeq transcript (Entrez)NM_199342
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SVBP
Cluster EST : UnigeneHs.113919 [ NCBI ]
CGAP (NCI)Hs.113919
Alternative Splicing GalleryENSG00000177868
Gene ExpressionSVBP [ NCBI-GEO ]   SVBP [ EBI - ARRAY_EXPRESS ]   SVBP [ SEEK ]   SVBP [ MEM ]
Gene Expression Viewer (FireBrowse)SVBP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374969
GTEX Portal (Tissue expression)SVBP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N300   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N300  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N300
Splice isoforms : SwissVarQ8N300
PhosPhoSitePlusQ8N300
Domains : Interpro (EBI)SVBP   
Domain families : Pfam (Sanger)CCDC23 (PF15674)   
Domain families : Pfam (NCBI)pfam15674   
Conserved Domain (NCBI)SVBP
DMDM Disease mutations374969
Blocks (Seattle)SVBP
SuperfamilyQ8N300
Human Protein AtlasENSG00000177868
Peptide AtlasQ8N300
HPRD14191
IPIIPI00166445   
Protein Interaction databases
DIP (DOE-UCLA)Q8N300
IntAct (EBI)Q8N300
FunCoupENSG00000177868
BioGRIDSVBP
STRING (EMBL)SVBP
ZODIACSVBP
Ontologies - Pathways
QuickGOQ8N300
Ontology : AmiGOextracellular region  protein secretion  negative regulation of endothelial cell migration  negative regulation of protein ubiquitination  apical part of cell  
Ontology : EGO-EBIextracellular region  protein secretion  negative regulation of endothelial cell migration  negative regulation of protein ubiquitination  apical part of cell  
NDEx NetworkSVBP
Atlas of Cancer Signalling NetworkSVBP
Wikipedia pathwaysSVBP
Orthology - Evolution
OrthoDB374969
GeneTree (enSembl)ENSG00000177868
Phylogenetic Trees/Animal Genes : TreeFamSVBP
HOVERGENQ8N300
HOGENOMQ8N300
Homologs : HomoloGeneSVBP
Homology/Alignments : Family Browser (UCSC)SVBP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSVBP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SVBP
dbVarSVBP
ClinVarSVBP
1000_GenomesSVBP 
Exome Variant ServerSVBP
ExAC (Exome Aggregation Consortium)SVBP (select the gene name)
Genetic variants : HAPMAP374969
Genomic Variants (DGV)SVBP [DGVbeta]
DECIPHERSVBP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSVBP 
Mutations
ICGC Data PortalSVBP 
TCGA Data PortalSVBP 
Broad Tumor PortalSVBP
OASIS PortalSVBP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSVBP
BioMutasearch SVBP
DgiDB (Drug Gene Interaction Database)SVBP
DoCM (Curated mutations)SVBP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SVBP (select a term)
intoGenSVBP
Cancer3DSVBP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSVBP
Genetic Testing Registry SVBP
NextProtQ8N300 [Medical]
TSGene374969
GENETestsSVBP
Target ValidationSVBP
Huge Navigator SVBP [HugePedia]
snp3D : Map Gene to Disease374969
BioCentury BCIQSVBP
ClinGenSVBP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374969
Chemical/Pharm GKB GenePA142672181
Clinical trialSVBP
Miscellaneous
canSAR (ICR)SVBP (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSVBP
EVEXSVBP
GoPubMedSVBP
iHOPSVBP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:16:11 CEST 2017

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