Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SVIP (small VCP/p97-interacting protein)

Identity

Alias_namessmall VCP/p97-interacting protein
Alias_symbol (synonym)DKFZp313A2432
Other alias-
HGNC (Hugo) SVIP
LocusID (NCBI) 258010
Atlas_Id 55368
Location 11p14.3  [Link to chromosome band 11p14]
Location_base_pair Starts at 22841809 and ends at 22851117 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EIF4G3 (1p36.12) / SVIP (11p14.3)SVIP (11p14.3) / WBP11 (12p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SVIP   25238
Cards
Entrez_Gene (NCBI)SVIP  258010  small VCP/p97-interacting protein
Aliases
GeneCards (Weizmann)SVIP
Ensembl hg19 (Hinxton)ENSG00000198168 [Gene_View]  chr11:22841809-22851117 [Contig_View]  SVIP [Vega]
Ensembl hg38 (Hinxton)ENSG00000198168 [Gene_View]  chr11:22841809-22851117 [Contig_View]  SVIP [Vega]
ICGC DataPortalENSG00000198168
TCGA cBioPortalSVIP
AceView (NCBI)SVIP
Genatlas (Paris)SVIP
WikiGenes258010
SOURCE (Princeton)SVIP
Genetics Home Reference (NIH)SVIP
Genomic and cartography
GoldenPath hg19 (UCSC)SVIP  -     chr11:22841809-22851117 -  11p14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SVIP  -     11p14.3   [Description]    (hg38-Dec_2013)
EnsemblSVIP - 11p14.3 [CytoView hg19]  SVIP - 11p14.3 [CytoView hg38]
Mapping of homologs : NCBISVIP [Mapview hg19]  SVIP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA347778 AF527534 AK095023 AL833119 BF219509
RefSeq transcript (Entrez)NM_001320340 NM_001320341 NM_001320342 NM_148893
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)SVIP
Cluster EST : UnigeneHs.349096 [ NCBI ]
CGAP (NCI)Hs.349096
Alternative Splicing GalleryENSG00000198168
Gene ExpressionSVIP [ NCBI-GEO ]   SVIP [ EBI - ARRAY_EXPRESS ]   SVIP [ SEEK ]   SVIP [ MEM ]
Gene Expression Viewer (FireBrowse)SVIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)258010
GTEX Portal (Tissue expression)SVIP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHG7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHG7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHG7
Splice isoforms : SwissVarQ8NHG7
PhosPhoSitePlusQ8NHG7
Domains : Interpro (EBI)SVIP   
Domain families : Pfam (Sanger)SVIP (PF15811)   
Domain families : Pfam (NCBI)pfam15811   
Domain structure : Prodom (Prabi Lyon)PD619568 (PD619568)   
Conserved Domain (NCBI)SVIP
DMDM Disease mutations258010
Blocks (Seattle)SVIP
SuperfamilyQ8NHG7
Human Protein AtlasENSG00000198168
Peptide AtlasQ8NHG7
IPIIPI00169259   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHG7
IntAct (EBI)Q8NHG7
FunCoupENSG00000198168
BioGRIDSVIP
STRING (EMBL)SVIP
ZODIACSVIP
Ontologies - Pathways
QuickGOQ8NHG7
Ontology : AmiGOGolgi membrane  protein binding  endoplasmic reticulum membrane  plasma membrane  positive regulation of autophagy  smooth endoplasmic reticulum membrane  anchored component of membrane  negative regulation of protein complex assembly  Derlin-1 retrotranslocation complex  protein self-association  ATPase binding  extracellular exosome  positive regulation of protein lipidation  negative regulation of ER-associated ubiquitin-dependent protein catabolic process  negative regulation of retrograde protein transport, ER to cytosol  negative regulation of VCP-NPL4-UFD1 AAA ATPase complex assembly  
Ontology : EGO-EBIGolgi membrane  protein binding  endoplasmic reticulum membrane  plasma membrane  positive regulation of autophagy  smooth endoplasmic reticulum membrane  anchored component of membrane  negative regulation of protein complex assembly  Derlin-1 retrotranslocation complex  protein self-association  ATPase binding  extracellular exosome  positive regulation of protein lipidation  negative regulation of ER-associated ubiquitin-dependent protein catabolic process  negative regulation of retrograde protein transport, ER to cytosol  negative regulation of VCP-NPL4-UFD1 AAA ATPase complex assembly  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkSVIP
Atlas of Cancer Signalling NetworkSVIP
Wikipedia pathwaysSVIP
Orthology - Evolution
OrthoDB258010
GeneTree (enSembl)ENSG00000198168
Phylogenetic Trees/Animal Genes : TreeFamSVIP
HOVERGENQ8NHG7
HOGENOMQ8NHG7
Homologs : HomoloGeneSVIP
Homology/Alignments : Family Browser (UCSC)SVIP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSVIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SVIP
dbVarSVIP
ClinVarSVIP
1000_GenomesSVIP 
Exome Variant ServerSVIP
ExAC (Exome Aggregation Consortium)SVIP (select the gene name)
Genetic variants : HAPMAP258010
Genomic Variants (DGV)SVIP [DGVbeta]
DECIPHER (Syndromes)11:22841809-22851117  ENSG00000198168
CONAN: Copy Number AnalysisSVIP 
Mutations
ICGC Data PortalSVIP 
TCGA Data PortalSVIP 
Broad Tumor PortalSVIP
OASIS PortalSVIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSVIP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSVIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SVIP
DgiDB (Drug Gene Interaction Database)SVIP
DoCM (Curated mutations)SVIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SVIP (select a term)
intoGenSVIP
Cancer3DSVIP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSVIP
Genetic Testing Registry SVIP
NextProtQ8NHG7 [Medical]
TSGene258010
GENETestsSVIP
Huge Navigator SVIP [HugePedia]
snp3D : Map Gene to Disease258010
BioCentury BCIQSVIP
ClinGenSVIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD258010
Chemical/Pharm GKB GenePA164726394
Clinical trialSVIP
Miscellaneous
canSAR (ICR)SVIP (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSVIP
EVEXSVIP
GoPubMedSVIP
iHOPSVIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:30:00 CET 2017

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