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SVOP (SV2 related protein)

Identity

Alias_namesSV2 related protein homolog (rat)
Alias_symbol (synonym)DKFZp761H039
Other alias-
HGNC (Hugo) SVOP
LocusID (NCBI) 55530
Atlas_Id 74393
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 108908129 and ends at 109021240 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATXN1 (6p22.3) / SVOP (12q24.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SVOP   25417
Cards
Entrez_Gene (NCBI)SVOP  55530  SV2 related protein
Aliases
GeneCards (Weizmann)SVOP
Ensembl hg19 (Hinxton)ENSG00000166111 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166111 [Gene_View]  chr12:108908129-109021240 [Contig_View]  SVOP [Vega]
ICGC DataPortalENSG00000166111
TCGA cBioPortalSVOP
AceView (NCBI)SVOP
Genatlas (Paris)SVOP
WikiGenes55530
SOURCE (Princeton)SVOP
Genetics Home Reference (NIH)SVOP
Genomic and cartography
GoldenPath hg38 (UCSC)SVOP  -     chr12:108908129-109021240 -  12q24.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SVOP  -     12q24.11   [Description]    (hg19-Feb_2009)
EnsemblSVOP - 12q24.11 [CytoView hg19]  SVOP - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBISVOP [Mapview hg19]  SVOP [Mapview hg38]
OMIM611699   
Gene and transcription
Genbank (Entrez)AK309780 AL359592 BC033587 BC037811 BC094722
RefSeq transcript (Entrez)NM_018711
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SVOP
Cluster EST : UnigeneHs.595078 [ NCBI ]
CGAP (NCI)Hs.595078
Alternative Splicing GalleryENSG00000166111
Gene ExpressionSVOP [ NCBI-GEO ]   SVOP [ EBI - ARRAY_EXPRESS ]   SVOP [ SEEK ]   SVOP [ MEM ]
Gene Expression Viewer (FireBrowse)SVOP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55530
GTEX Portal (Tissue expression)SVOP
Human Protein AtlasENSG00000166111-SVOP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4V2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4V2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4V2
Splice isoforms : SwissVarQ8N4V2
PhosPhoSitePlusQ8N4V2
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom    MFS_sugar_transport-like    Orgcat_transp/SVOP   
Domain families : Pfam (Sanger)MFS_1 (PF07690)    Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam07690    pfam00083   
Conserved Domain (NCBI)SVOP
DMDM Disease mutations55530
Blocks (Seattle)SVOP
SuperfamilyQ8N4V2
Human Protein Atlas [tissue]ENSG00000166111-SVOP [tissue]
Peptide AtlasQ8N4V2
HPRD13224
IPIIPI00166786   IPI01021990   IPI01021667   IPI01022166   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4V2
IntAct (EBI)Q8N4V2
FunCoupENSG00000166111
BioGRIDSVOP
STRING (EMBL)SVOP
ZODIACSVOP
Ontologies - Pathways
QuickGOQ8N4V2
Ontology : AmiGOsynaptic vesicle  integral component of membrane  substrate-specific transmembrane transporter activity  cell junction  synaptic vesicle membrane  transmembrane transport  
Ontology : EGO-EBIsynaptic vesicle  integral component of membrane  substrate-specific transmembrane transporter activity  cell junction  synaptic vesicle membrane  transmembrane transport  
NDEx NetworkSVOP
Atlas of Cancer Signalling NetworkSVOP
Wikipedia pathwaysSVOP
Orthology - Evolution
OrthoDB55530
GeneTree (enSembl)ENSG00000166111
Phylogenetic Trees/Animal Genes : TreeFamSVOP
HOVERGENQ8N4V2
HOGENOMQ8N4V2
Homologs : HomoloGeneSVOP
Homology/Alignments : Family Browser (UCSC)SVOP
Gene fusions - Rearrangements
Tumor Fusion PortalSVOP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSVOP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SVOP
dbVarSVOP
ClinVarSVOP
1000_GenomesSVOP 
Exome Variant ServerSVOP
ExAC (Exome Aggregation Consortium)ENSG00000166111
GNOMAD BrowserENSG00000166111
Genetic variants : HAPMAP55530
Genomic Variants (DGV)SVOP [DGVbeta]
DECIPHERSVOP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSVOP 
Mutations
ICGC Data PortalSVOP 
TCGA Data PortalSVOP 
Broad Tumor PortalSVOP
OASIS PortalSVOP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSVOP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSVOP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SVOP
DgiDB (Drug Gene Interaction Database)SVOP
DoCM (Curated mutations)SVOP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SVOP (select a term)
intoGenSVOP
Cancer3DSVOP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611699   
Orphanet
DisGeNETSVOP
MedgenSVOP
Genetic Testing Registry SVOP
NextProtQ8N4V2 [Medical]
TSGene55530
GENETestsSVOP
Target ValidationSVOP
Huge Navigator SVOP [HugePedia]
snp3D : Map Gene to Disease55530
BioCentury BCIQSVOP
ClinGenSVOP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55530
Chemical/Pharm GKB GenePA142670848
Clinical trialSVOP
Miscellaneous
canSAR (ICR)SVOP (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSVOP
EVEXSVOP
GoPubMedSVOP
iHOPSVOP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:27:32 CET 2017

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