Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SVOPL (SVOP like)

Identity

Alias_namesSV2 related protein homolog (rat)-like
SVOP-like
Alias_symbol (synonym)MGC46715
Other alias-
HGNC (Hugo) SVOPL
LocusID (NCBI) 136306
Atlas_Id 74394
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 138594285 and ends at 138679045 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRIM24 (7q33) / SVOPL (7q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SVOPL   27034
LRG (Locus Reference Genomic)LRG_1103
Cards
Entrez_Gene (NCBI)SVOPL  136306  SVOP like
Aliases
GeneCards (Weizmann)SVOPL
Ensembl hg19 (Hinxton)ENSG00000157703 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157703 [Gene_View]  chr7:138594285-138679045 [Contig_View]  SVOPL [Vega]
ICGC DataPortalENSG00000157703
TCGA cBioPortalSVOPL
AceView (NCBI)SVOPL
Genatlas (Paris)SVOPL
WikiGenes136306
SOURCE (Princeton)SVOPL
Genetics Home Reference (NIH)SVOPL
Genomic and cartography
GoldenPath hg38 (UCSC)SVOPL  -     chr7:138594285-138679045 -  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SVOPL  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblSVOPL - 7q34 [CytoView hg19]  SVOPL - 7q34 [CytoView hg38]
Mapping of homologs : NCBISVOPL [Mapview hg19]  SVOPL [Mapview hg38]
OMIM611700   
Gene and transcription
Genbank (Entrez)AL704123 BC036796 BX349158 BX648789
RefSeq transcript (Entrez)NM_001139456 NM_001331192 NM_174959
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SVOPL
Cluster EST : UnigeneHs.99414 [ NCBI ]
CGAP (NCI)Hs.99414
Alternative Splicing GalleryENSG00000157703
Gene ExpressionSVOPL [ NCBI-GEO ]   SVOPL [ EBI - ARRAY_EXPRESS ]   SVOPL [ SEEK ]   SVOPL [ MEM ]
Gene Expression Viewer (FireBrowse)SVOPL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)136306
GTEX Portal (Tissue expression)SVOPL
Human Protein AtlasENSG00000157703-SVOPL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N434   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N434  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N434
Splice isoforms : SwissVarQ8N434
PhosPhoSitePlusQ8N434
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom    MFS_sugar_transport-like   
Domain families : Pfam (Sanger)MFS_1 (PF07690)    Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam07690    pfam00083   
Conserved Domain (NCBI)SVOPL
DMDM Disease mutations136306
Blocks (Seattle)SVOPL
SuperfamilyQ8N434
Human Protein Atlas [tissue]ENSG00000157703-SVOPL [tissue]
Peptide AtlasQ8N434
HPRD11235
IPIIPI00782953   IPI00166619   IPI00867648   IPI00925660   IPI00925608   
Protein Interaction databases
DIP (DOE-UCLA)Q8N434
IntAct (EBI)Q8N434
FunCoupENSG00000157703
BioGRIDSVOPL
STRING (EMBL)SVOPL
ZODIACSVOPL
Ontologies - Pathways
QuickGOQ8N434
Ontology : AmiGOintegral component of membrane  substrate-specific transmembrane transporter activity  transmembrane transport  
Ontology : EGO-EBIintegral component of membrane  substrate-specific transmembrane transporter activity  transmembrane transport  
NDEx NetworkSVOPL
Atlas of Cancer Signalling NetworkSVOPL
Wikipedia pathwaysSVOPL
Orthology - Evolution
OrthoDB136306
GeneTree (enSembl)ENSG00000157703
Phylogenetic Trees/Animal Genes : TreeFamSVOPL
HOVERGENQ8N434
HOGENOMQ8N434
Homologs : HomoloGeneSVOPL
Homology/Alignments : Family Browser (UCSC)SVOPL
Gene fusions - Rearrangements
Fusion: Tumor Portal SVOPL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSVOPL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SVOPL
dbVarSVOPL
ClinVarSVOPL
1000_GenomesSVOPL 
Exome Variant ServerSVOPL
ExAC (Exome Aggregation Consortium)ENSG00000157703
GNOMAD BrowserENSG00000157703
Genetic variants : HAPMAP136306
Genomic Variants (DGV)SVOPL [DGVbeta]
DECIPHERSVOPL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSVOPL 
Mutations
ICGC Data PortalSVOPL 
TCGA Data PortalSVOPL 
Broad Tumor PortalSVOPL
OASIS PortalSVOPL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSVOPL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSVOPL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variataon DetAbase)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SVOPL
DgiDB (Drug Gene Interaction Database)SVOPL
DoCM (Curated mutations)SVOPL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SVOPL (select a term)
intoGenSVOPL
Cancer3DSVOPL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611700   
Orphanet
MedgenSVOPL
Genetic Testing Registry SVOPL
NextProtQ8N434 [Medical]
TSGene136306
GENETestsSVOPL
Target ValidationSVOPL
Huge Navigator SVOPL [HugePedia]
snp3D : Map Gene to Disease136306
BioCentury BCIQSVOPL
ClinGenSVOPL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD136306
Chemical/Pharm GKB GenePA162405089
Clinical trialSVOPL
Miscellaneous
canSAR (ICR)SVOPL (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSVOPL
EVEXSVOPL
GoPubMedSVOPL
iHOPSVOPL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:31:28 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.