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SWI5 (SWI5 homologous recombination repair protein)

Identity

Alias_namesC9orf119
chromosome 9 open reading frame 119
SWI5 recombination repair homolog (yeast)
Alias_symbol (synonym)bA395P17.9
SAE3
Other alias
HGNC (Hugo) SWI5
LocusID (NCBI) 375757
Atlas_Id 52315
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 131038425 and ends at 131051268 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IRGQ (19q13.31) / SWI5 (9q34.11)SWI5 (9q34.11) / RINT1 (7q22.3)SWI5 9q34.11 / RINT1 7q22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SWI5   31412
Cards
Entrez_Gene (NCBI)SWI5  375757  SWI5 homologous recombination repair protein
AliasesC9orf119; SAE3
GeneCards (Weizmann)SWI5
Ensembl hg19 (Hinxton)ENSG00000175854 [Gene_View]  chr9:131038425-131051268 [Contig_View]  SWI5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175854 [Gene_View]  chr9:131038425-131051268 [Contig_View]  SWI5 [Vega]
ICGC DataPortalENSG00000175854
TCGA cBioPortalSWI5
AceView (NCBI)SWI5
Genatlas (Paris)SWI5
WikiGenes375757
SOURCE (Princeton)SWI5
Genetics Home Reference (NIH)SWI5
Genomic and cartography
GoldenPath hg19 (UCSC)SWI5  -     chr9:131038425-131051268 +  9q34.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SWI5  -     9q34.11   [Description]    (hg38-Dec_2013)
EnsemblSWI5 - 9q34.11 [CytoView hg19]  SWI5 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBISWI5 [Mapview hg19]  SWI5 [Mapview hg38]
OMIM616528   
Gene and transcription
Genbank (Entrez)AK311408 BC029911 BG541668 CF129530 DQ414820
RefSeq transcript (Entrez)NM_001040011 NM_001318089 NM_001318092
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)SWI5
Cluster EST : UnigeneHs.259594 [ NCBI ]
CGAP (NCI)Hs.259594
Alternative Splicing GalleryENSG00000175854
Gene ExpressionSWI5 [ NCBI-GEO ]   SWI5 [ EBI - ARRAY_EXPRESS ]   SWI5 [ SEEK ]   SWI5 [ MEM ]
Gene Expression Viewer (FireBrowse)SWI5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375757
GTEX Portal (Tissue expression)SWI5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1ZZU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1ZZU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1ZZU3
Splice isoforms : SwissVarQ1ZZU3
PhosPhoSitePlusQ1ZZU3
Domains : Interpro (EBI)DNA-repair_Swi5   
Domain families : Pfam (Sanger)Swi5 (PF07061)   
Domain families : Pfam (NCBI)pfam07061   
Conserved Domain (NCBI)SWI5
DMDM Disease mutations375757
Blocks (Seattle)SWI5
SuperfamilyQ1ZZU3
Human Protein AtlasENSG00000175854
Peptide AtlasQ1ZZU3
IPIIPI00374539   IPI00514941   IPI00740076   IPI01009839   
Protein Interaction databases
DIP (DOE-UCLA)Q1ZZU3
IntAct (EBI)Q1ZZU3
FunCoupENSG00000175854
BioGRIDSWI5
STRING (EMBL)SWI5
ZODIACSWI5
Ontologies - Pathways
QuickGOQ1ZZU3
Ontology : AmiGOdouble-strand break repair via homologous recombination  DNA recombinase assembly  protein binding  nucleus  Swi5-Sfr1 complex  cellular response to ionizing radiation  
Ontology : EGO-EBIdouble-strand break repair via homologous recombination  DNA recombinase assembly  protein binding  nucleus  Swi5-Sfr1 complex  cellular response to ionizing radiation  
NDEx NetworkSWI5
Atlas of Cancer Signalling NetworkSWI5
Wikipedia pathwaysSWI5
Orthology - Evolution
OrthoDB375757
GeneTree (enSembl)ENSG00000175854
Phylogenetic Trees/Animal Genes : TreeFamSWI5
HOVERGENQ1ZZU3
HOGENOMQ1ZZU3
Homologs : HomoloGeneSWI5
Homology/Alignments : Family Browser (UCSC)SWI5
Gene fusions - Rearrangements
Fusion : MitelmanSWI5/RINT1 [9q34.11/7q22.3]  
Fusion: TCGASWI5 9q34.11 RINT1 7q22.3 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSWI5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SWI5
dbVarSWI5
ClinVarSWI5
1000_GenomesSWI5 
Exome Variant ServerSWI5
ExAC (Exome Aggregation Consortium)SWI5 (select the gene name)
Genetic variants : HAPMAP375757
Genomic Variants (DGV)SWI5 [DGVbeta]
DECIPHER (Syndromes)9:131038425-131051268  ENSG00000175854
CONAN: Copy Number AnalysisSWI5 
Mutations
ICGC Data PortalSWI5 
TCGA Data PortalSWI5 
Broad Tumor PortalSWI5
OASIS PortalSWI5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSWI5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SWI5
DgiDB (Drug Gene Interaction Database)SWI5
DoCM (Curated mutations)SWI5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SWI5 (select a term)
intoGenSWI5
Cancer3DSWI5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616528   
Orphanet
MedgenSWI5
Genetic Testing Registry SWI5
NextProtQ1ZZU3 [Medical]
TSGene375757
GENETestsSWI5
Huge Navigator SWI5 [HugePedia]
snp3D : Map Gene to Disease375757
BioCentury BCIQSWI5
ClinGenSWI5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375757
Chemical/Pharm GKB GenePA134903574
Clinical trialSWI5
Miscellaneous
canSAR (ICR)SWI5 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSWI5
EVEXSWI5
GoPubMedSWI5
iHOPSWI5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 30 15:21:33 CEST 2017

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