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SWT1 (SWT1, RNA endoribonuclease homolog)

Identity

Alias_namesC1orf26
chromosome 1 open reading frame 26
SWT1 RNA endoribonuclease homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ20121
HsSwt1
Other alias
HGNC (Hugo) SWT1
LocusID (NCBI) 54823
Atlas_Id 74396
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 185157060 and ends at 185291781 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SWT1   16785
Cards
Entrez_Gene (NCBI)SWT1  54823  SWT1, RNA endoribonuclease homolog
AliasesC1orf26; HsSwt1
GeneCards (Weizmann)SWT1
Ensembl hg19 (Hinxton)ENSG00000116668 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116668 [Gene_View]  chr1:185157060-185291781 [Contig_View]  SWT1 [Vega]
ICGC DataPortalENSG00000116668
TCGA cBioPortalSWT1
AceView (NCBI)SWT1
Genatlas (Paris)SWT1
WikiGenes54823
SOURCE (Princeton)SWT1
Genetics Home Reference (NIH)SWT1
Genomic and cartography
GoldenPath hg38 (UCSC)SWT1  -     chr1:185157060-185291781 +  1q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SWT1  -     1q25.3   [Description]    (hg19-Feb_2009)
EnsemblSWT1 - 1q25.3 [CytoView hg19]  SWT1 - 1q25.3 [CytoView hg38]
Mapping of homologs : NCBISWT1 [Mapview hg19]  SWT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF288392 AK000128 AK093263 AK127980 AK225238
RefSeq transcript (Entrez)NM_001105518 NM_017673
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SWT1
Cluster EST : UnigeneHs.134183 [ NCBI ]
CGAP (NCI)Hs.134183
Alternative Splicing GalleryENSG00000116668
Gene ExpressionSWT1 [ NCBI-GEO ]   SWT1 [ EBI - ARRAY_EXPRESS ]   SWT1 [ SEEK ]   SWT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SWT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54823
GTEX Portal (Tissue expression)SWT1
Human Protein AtlasENSG00000116668-SWT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T5J6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T5J6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T5J6
Splice isoforms : SwissVarQ5T5J6
PhosPhoSitePlusQ5T5J6
Domains : Interpro (EBI)PIN_dom    PIN_domain-like   
Domain families : Pfam (Sanger)PIN_4 (PF13638)   
Domain families : Pfam (NCBI)pfam13638   
Domain families : Smart (EMBL)PINc (SM00670)  
Conserved Domain (NCBI)SWT1
DMDM Disease mutations54823
Blocks (Seattle)SWT1
SuperfamilyQ5T5J6
Human Protein Atlas [tissue]ENSG00000116668-SWT1 [tissue]
Peptide AtlasQ5T5J6
HPRD10726
IPIIPI00329637   IPI00642479   
Protein Interaction databases
DIP (DOE-UCLA)Q5T5J6
IntAct (EBI)Q5T5J6
FunCoupENSG00000116668
BioGRIDSWT1
STRING (EMBL)SWT1
ZODIACSWT1
Ontologies - Pathways
QuickGOQ5T5J6
Ontology : AmiGOnucleus  transcription, DNA-templated  
Ontology : EGO-EBInucleus  transcription, DNA-templated  
NDEx NetworkSWT1
Atlas of Cancer Signalling NetworkSWT1
Wikipedia pathwaysSWT1
Orthology - Evolution
OrthoDB54823
GeneTree (enSembl)ENSG00000116668
Phylogenetic Trees/Animal Genes : TreeFamSWT1
HOVERGENQ5T5J6
HOGENOMQ5T5J6
Homologs : HomoloGeneSWT1
Homology/Alignments : Family Browser (UCSC)SWT1
Gene fusions - Rearrangements
Tumor Fusion PortalSWT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSWT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SWT1
dbVarSWT1
ClinVarSWT1
1000_GenomesSWT1 
Exome Variant ServerSWT1
ExAC (Exome Aggregation Consortium)ENSG00000116668
GNOMAD BrowserENSG00000116668
Genetic variants : HAPMAP54823
Genomic Variants (DGV)SWT1 [DGVbeta]
DECIPHERSWT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSWT1 
Mutations
ICGC Data PortalSWT1 
TCGA Data PortalSWT1 
Broad Tumor PortalSWT1
OASIS PortalSWT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSWT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSWT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SWT1
DgiDB (Drug Gene Interaction Database)SWT1
DoCM (Curated mutations)SWT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SWT1 (select a term)
intoGenSWT1
Cancer3DSWT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSWT1
MedgenSWT1
Genetic Testing Registry SWT1
NextProtQ5T5J6 [Medical]
TSGene54823
GENETestsSWT1
Target ValidationSWT1
Huge Navigator SWT1 [HugePedia]
snp3D : Map Gene to Disease54823
BioCentury BCIQSWT1
ClinGenSWT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54823
Chemical/Pharm GKB GenePA25613
Clinical trialSWT1
Miscellaneous
canSAR (ICR)SWT1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSWT1
EVEXSWT1
GoPubMedSWT1
iHOPSWT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:03:15 CET 2017

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