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SYBU (syntabulin)

Identity

Alias_namessyntabulin (syntaxin-interacting)
Alias_symbol (synonym)FLJ20366
GOLSYN
KIAA1472
OCSYN
SNPHL
Other alias
HGNC (Hugo) SYBU
LocusID (NCBI) 55638
Atlas_Id 54680
Location 8q23.2  [Link to chromosome band 8q23]
Location_base_pair Starts at 109574176 and ends at 109691791 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKFN1 (17q22) / SYBU (8q23.2)MBTD1 (17q21.33) / SYBU (8q23.2)NUDCD1 (8q23.1) / SYBU (8q23.2)
SAMD12 (8q24.12) / SYBU (8q23.2)SYBU (8q23.2) / RBM23 (14q11.2)MBTD1 17q21.33 / SYBU 8q23.2
SAMD12 8q24.12 / SYBU 8q23.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)SYBU   26011
Cards
Entrez_Gene (NCBI)SYBU  55638  syntabulin
AliasesGOLSYN; OCSYN; SNPHL
GeneCards (Weizmann)SYBU
Ensembl hg19 (Hinxton)ENSG00000147642 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147642 [Gene_View]  chr8:109574176-109691791 [Contig_View]  SYBU [Vega]
ICGC DataPortalENSG00000147642
TCGA cBioPortalSYBU
AceView (NCBI)SYBU
Genatlas (Paris)SYBU
WikiGenes55638
SOURCE (Princeton)SYBU
Genetics Home Reference (NIH)SYBU
Genomic and cartography
GoldenPath hg38 (UCSC)SYBU  -     chr8:109574176-109691791 -  8q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYBU  -     8q23.2   [Description]    (hg19-Feb_2009)
EnsemblSYBU - 8q23.2 [CytoView hg19]  SYBU - 8q23.2 [CytoView hg38]
Mapping of homologs : NCBISYBU [Mapview hg19]  SYBU [Mapview hg38]
OMIM611568   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001099743 NM_001099744 NM_001099745 NM_001099746 NM_001099747 NM_001099748 NM_001099749 NM_001099750 NM_001099751 NM_001099752 NM_001099753 NM_001099754 NM_001099755 NM_001099756 NM_001330596 NM_017786
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYBU
Cluster EST : UnigeneHs.390738 [ NCBI ]
CGAP (NCI)Hs.390738
Alternative Splicing GalleryENSG00000147642
Gene ExpressionSYBU [ NCBI-GEO ]   SYBU [ EBI - ARRAY_EXPRESS ]   SYBU [ SEEK ]   SYBU [ MEM ]
Gene Expression Viewer (FireBrowse)SYBU [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55638
GTEX Portal (Tissue expression)SYBU
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX95   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX95  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX95
Splice isoforms : SwissVarQ9NX95
PhosPhoSitePlusQ9NX95
Domains : Interpro (EBI)Syntabulin    Syntaphilin/Syntabulin   
Domain families : Pfam (Sanger)Syntaphilin (PF15290)   
Domain families : Pfam (NCBI)pfam15290   
Conserved Domain (NCBI)SYBU
DMDM Disease mutations55638
Blocks (Seattle)SYBU
SuperfamilyQ9NX95
Human Protein AtlasENSG00000147642
Peptide AtlasQ9NX95
HPRD07902
IPI###############################################################################################################################################################################################################################################################   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX95
IntAct (EBI)Q9NX95
FunCoupENSG00000147642
BioGRIDSYBU
STRING (EMBL)SYBU
ZODIACSYBU
Ontologies - Pathways
QuickGOQ9NX95
Ontology : AmiGOGolgi membrane  protein binding  microtubule  microtubule binding  integral component of membrane  syntaxin-1 binding  kinesin binding  cytoplasmic vesicle  vesicle  intracellular membrane-bounded organelle  regulation of insulin secretion involved in cellular response to glucose stimulus  dense body  
Ontology : EGO-EBIGolgi membrane  protein binding  microtubule  microtubule binding  integral component of membrane  syntaxin-1 binding  kinesin binding  cytoplasmic vesicle  vesicle  intracellular membrane-bounded organelle  regulation of insulin secretion involved in cellular response to glucose stimulus  dense body  
NDEx NetworkSYBU
Atlas of Cancer Signalling NetworkSYBU
Wikipedia pathwaysSYBU
Orthology - Evolution
OrthoDB55638
GeneTree (enSembl)ENSG00000147642
Phylogenetic Trees/Animal Genes : TreeFamSYBU
HOVERGENQ9NX95
HOGENOMQ9NX95
Homologs : HomoloGeneSYBU
Homology/Alignments : Family Browser (UCSC)SYBU
Gene fusions - Rearrangements
Fusion : MitelmanMBTD1/SYBU [17q21.33/8q23.2]  [t(8;17)(q23;q21)]  
Fusion : MitelmanNUDCD1/SYBU [8q23.1/8q23.2]  [t(8;8)(q23;q23)]  
Fusion : MitelmanSAMD12/SYBU [8q24.12/8q23.2]  [t(8;8)(q23;q24)]  
Fusion: TCGAMBTD1 17q21.33 SYBU 8q23.2 PRAD
Fusion: TCGASAMD12 8q24.12 SYBU 8q23.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYBU [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYBU
dbVarSYBU
ClinVarSYBU
1000_GenomesSYBU 
Exome Variant ServerSYBU
ExAC (Exome Aggregation Consortium)SYBU (select the gene name)
Genetic variants : HAPMAP55638
Genomic Variants (DGV)SYBU [DGVbeta]
DECIPHERSYBU [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYBU 
Mutations
ICGC Data PortalSYBU 
TCGA Data PortalSYBU 
Broad Tumor PortalSYBU
OASIS PortalSYBU [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYBU  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYBU
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYBU
DgiDB (Drug Gene Interaction Database)SYBU
DoCM (Curated mutations)SYBU (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYBU (select a term)
intoGenSYBU
Cancer3DSYBU(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611568   
Orphanet
MedgenSYBU
Genetic Testing Registry SYBU
NextProtQ9NX95 [Medical]
TSGene55638
GENETestsSYBU
Huge Navigator SYBU [HugePedia]
snp3D : Map Gene to Disease55638
BioCentury BCIQSYBU
ClinGenSYBU
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55638
Chemical/Pharm GKB GenePA165586000
Clinical trialSYBU
Miscellaneous
canSAR (ICR)SYBU (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYBU
EVEXSYBU
GoPubMedSYBU
iHOPSYBU
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:39:55 CEST 2017

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