Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SYCE1 (synaptonemal complex central element protein 1)

Identity

Alias_namesC10orf94
chromosome 10 open reading frame 94
Alias_symbol (synonym)bA108K14.6
CT76
Other aliasPOF12
SPGF15
HGNC (Hugo) SYCE1
LocusID (NCBI) 93426
Atlas_Id 74397
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 133553900 and ends at 133565634 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYCE1   28852
Cards
Entrez_Gene (NCBI)SYCE1  93426  synaptonemal complex central element protein 1
AliasesC10orf94; CT76; POF12; SPGF15
GeneCards (Weizmann)SYCE1
Ensembl hg19 (Hinxton)ENSG00000171772 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171772 [Gene_View]  chr10:133553900-133565634 [Contig_View]  SYCE1 [Vega]
ICGC DataPortalENSG00000171772
TCGA cBioPortalSYCE1
AceView (NCBI)SYCE1
Genatlas (Paris)SYCE1
WikiGenes93426
SOURCE (Princeton)SYCE1
Genetics Home Reference (NIH)SYCE1
Genomic and cartography
GoldenPath hg38 (UCSC)SYCE1  -     chr10:133553900-133565634 -  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYCE1  -     10q26.3   [Description]    (hg19-Feb_2009)
EnsemblSYCE1 - 10q26.3 [CytoView hg19]  SYCE1 - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBISYCE1 [Mapview hg19]  SYCE1 [Mapview hg38]
OMIM611486   616947   616950   
Gene and transcription
Genbank (Entrez)AK309935 AK314978 AY027807 AY027808 BC034821
RefSeq transcript (Entrez)NM_001143763 NM_001143764 NM_130784 NM_201564
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYCE1
Cluster EST : UnigeneHs.553795 [ NCBI ]
CGAP (NCI)Hs.553795
Alternative Splicing GalleryENSG00000171772
Gene ExpressionSYCE1 [ NCBI-GEO ]   SYCE1 [ EBI - ARRAY_EXPRESS ]   SYCE1 [ SEEK ]   SYCE1 [ MEM ]
Gene Expression Viewer (FireBrowse)SYCE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93426
GTEX Portal (Tissue expression)SYCE1
Human Protein AtlasENSG00000171772-SYCE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0S2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0S2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0S2
Splice isoforms : SwissVarQ8N0S2
PhosPhoSitePlusQ8N0S2
Domains : Interpro (EBI)SYCE1   
Domain families : Pfam (Sanger)SYCE1 (PF15233)   
Domain families : Pfam (NCBI)pfam15233   
Conserved Domain (NCBI)SYCE1
DMDM Disease mutations93426
Blocks (Seattle)SYCE1
SuperfamilyQ8N0S2
Human Protein Atlas [tissue]ENSG00000171772-SYCE1 [tissue]
Peptide AtlasQ8N0S2
HPRD12598
IPIIPI00410237   IPI00183533   IPI00402665   IPI00917439   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0S2
IntAct (EBI)Q8N0S2
FunCoupENSG00000171772
BioGRIDSYCE1
STRING (EMBL)SYCE1
ZODIACSYCE1
Ontologies - Pathways
QuickGOQ8N0S2
Ontology : AmiGOcentral element  protein binding  synaptonemal complex assembly  cell division  
Ontology : EGO-EBIcentral element  protein binding  synaptonemal complex assembly  cell division  
NDEx NetworkSYCE1
Atlas of Cancer Signalling NetworkSYCE1
Wikipedia pathwaysSYCE1
Orthology - Evolution
OrthoDB93426
GeneTree (enSembl)ENSG00000171772
Phylogenetic Trees/Animal Genes : TreeFamSYCE1
HOVERGENQ8N0S2
HOGENOMQ8N0S2
Homologs : HomoloGeneSYCE1
Homology/Alignments : Family Browser (UCSC)SYCE1
Gene fusions - Rearrangements
Tumor Fusion PortalSYCE1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYCE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYCE1
dbVarSYCE1
ClinVarSYCE1
1000_GenomesSYCE1 
Exome Variant ServerSYCE1
ExAC (Exome Aggregation Consortium)ENSG00000171772
GNOMAD BrowserENSG00000171772
Genetic variants : HAPMAP93426
Genomic Variants (DGV)SYCE1 [DGVbeta]
DECIPHERSYCE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYCE1 
Mutations
ICGC Data PortalSYCE1 
TCGA Data PortalSYCE1 
Broad Tumor PortalSYCE1
OASIS PortalSYCE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYCE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYCE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYCE1
DgiDB (Drug Gene Interaction Database)SYCE1
DoCM (Curated mutations)SYCE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYCE1 (select a term)
intoGenSYCE1
Cancer3DSYCE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611486    616947    616950   
Orphanet22774   
DisGeNETSYCE1
MedgenSYCE1
Genetic Testing Registry SYCE1
NextProtQ8N0S2 [Medical]
TSGene93426
GENETestsSYCE1
Target ValidationSYCE1
Huge Navigator SYCE1 [HugePedia]
snp3D : Map Gene to Disease93426
BioCentury BCIQSYCE1
ClinGenSYCE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93426
Chemical/Pharm GKB GenePA134876767
Clinical trialSYCE1
Miscellaneous
canSAR (ICR)SYCE1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYCE1
EVEXSYCE1
GoPubMedSYCE1
iHOPSYCE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:17:03 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.