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SYCE1 (synaptonemal complex central element protein 1)

Identity

Alias (NCBI)C10orf94
CT76
POF12
SPGF15
HGNC (Hugo) SYCE1
HGNC Alias symbbA108K14.6
CT76
HGNC Alias namecancer/testis antigen 76
HGNC Previous nameC10orf94
HGNC Previous namechromosome 10 open reading frame 94
LocusID (NCBI) 93426
Atlas_Id 74397
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 133553900 and ends at 133568275 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SYCE1   28852
Cards
Entrez_Gene (NCBI)SYCE1    synaptonemal complex central element protein 1
AliasesC10orf94; CT76; POF12; SPGF15
GeneCards (Weizmann)SYCE1
Ensembl hg19 (Hinxton)ENSG00000171772 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171772 [Gene_View]  ENSG00000171772 [Sequence]  chr10:133553900-133568275 [Contig_View]  SYCE1 [Vega]
ICGC DataPortalENSG00000171772
TCGA cBioPortalSYCE1
AceView (NCBI)SYCE1
Genatlas (Paris)SYCE1
SOURCE (Princeton)SYCE1
Genetics Home Reference (NIH)SYCE1
Genomic and cartography
GoldenPath hg38 (UCSC)SYCE1  -     chr10:133553900-133568275 -  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYCE1  -     10q26.3   [Description]    (hg19-Feb_2009)
GoldenPathSYCE1 - 10q26.3 [CytoView hg19]  SYCE1 - 10q26.3 [CytoView hg38]
ImmunoBaseENSG00000171772
Genome Data Viewer NCBISYCE1 [Mapview hg19]  
OMIM611486   616947   616950   
Gene and transcription
Genbank (Entrez)AK309935 AK314978 AY027807 AY027808 BC034821
RefSeq transcript (Entrez)NM_001143763 NM_001143764 NM_130784 NM_201564
Consensus coding sequences : CCDS (NCBI)SYCE1
Gene ExpressionSYCE1 [ NCBI-GEO ]   SYCE1 [ EBI - ARRAY_EXPRESS ]   SYCE1 [ SEEK ]   SYCE1 [ MEM ]
Gene Expression Viewer (FireBrowse)SYCE1 [ Firebrowse - Broad ]
GenevisibleExpression of SYCE1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93426
GTEX Portal (Tissue expression)SYCE1
Human Protein AtlasENSG00000171772-SYCE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0S2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0S2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0S2
PhosPhoSitePlusQ8N0S2
Domains : Interpro (EBI)SYCE1   
Domain families : Pfam (Sanger)SYCE1 (PF15233)   
Domain families : Pfam (NCBI)pfam15233   
Conserved Domain (NCBI)SYCE1
SuperfamilyQ8N0S2
AlphaFold pdb e-kbQ8N0S2   
Human Protein Atlas [tissue]ENSG00000171772-SYCE1 [tissue]
HPRD12598
Protein Interaction databases
DIP (DOE-UCLA)Q8N0S2
IntAct (EBI)Q8N0S2
BioGRIDSYCE1
STRING (EMBL)SYCE1
ZODIACSYCE1
Ontologies - Pathways
QuickGOQ8N0S2
Ontology : AmiGOsynaptonemal complex  central element  protein binding  nucleoplasm  chromosome  cytosol  synaptonemal complex assembly  intracellular membrane-bounded organelle  cell division  
Ontology : EGO-EBIsynaptonemal complex  central element  protein binding  nucleoplasm  chromosome  cytosol  synaptonemal complex assembly  intracellular membrane-bounded organelle  cell division  
NDEx NetworkSYCE1
Atlas of Cancer Signalling NetworkSYCE1
Wikipedia pathwaysSYCE1
Orthology - Evolution
OrthoDB93426
GeneTree (enSembl)ENSG00000171772
Phylogenetic Trees/Animal Genes : TreeFamSYCE1
Homologs : HomoloGeneSYCE1
Homology/Alignments : Family Browser (UCSC)SYCE1
Gene fusions - Rearrangements
Fusion : QuiverSYCE1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYCE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYCE1
dbVarSYCE1
ClinVarSYCE1
MonarchSYCE1
1000_GenomesSYCE1 
Exome Variant ServerSYCE1
GNOMAD BrowserENSG00000171772
Varsome BrowserSYCE1
ACMGSYCE1 variants
VarityQ8N0S2
Genomic Variants (DGV)SYCE1 [DGVbeta]
DECIPHERSYCE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYCE1 
Mutations
ICGC Data PortalSYCE1 
TCGA Data PortalSYCE1 
Broad Tumor PortalSYCE1
OASIS PortalSYCE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYCE1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSYCE1
Mutations and Diseases : HGMDSYCE1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSYCE1
DgiDB (Drug Gene Interaction Database)SYCE1
DoCM (Curated mutations)SYCE1
CIViC (Clinical Interpretations of Variants in Cancer)SYCE1
Cancer3DSYCE1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611486    616947    616950   
Orphanet22774   
DisGeNETSYCE1
MedgenSYCE1
Genetic Testing Registry SYCE1
NextProtQ8N0S2 [Medical]
GENETestsSYCE1
Target ValidationSYCE1
Huge Navigator SYCE1 [HugePedia]
ClinGenSYCE1
Clinical trials, drugs, therapy
MyCancerGenomeSYCE1
Protein Interactions : CTDSYCE1
Pharm GKB GenePA134876767
PharosQ8N0S2
Clinical trialSYCE1
Miscellaneous
canSAR (ICR)SYCE1
HarmonizomeSYCE1
DataMed IndexSYCE1
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSYCE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:38 CEST 2021

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