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SYCE1L (synaptonemal complex central element protein 1 like)

Identity

Alias_namessynaptonemal complex central element protein 1-like
Alias_symbol (synonym)MRP2
Other alias
HGNC (Hugo) SYCE1L
LocusID (NCBI) 100130958
Atlas_Id 74398
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 77199397 and ends at 77213004 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYCE1L   37236
Cards
Entrez_Gene (NCBI)SYCE1L  100130958  synaptonemal complex central element protein 1 like
AliasesMRP2
GeneCards (Weizmann)SYCE1L
Ensembl hg19 (Hinxton)ENSG00000205078 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205078 [Gene_View]  chr16:77199397-77213004 [Contig_View]  SYCE1L [Vega]
ICGC DataPortalENSG00000205078
TCGA cBioPortalSYCE1L
AceView (NCBI)SYCE1L
Genatlas (Paris)SYCE1L
WikiGenes100130958
SOURCE (Princeton)SYCE1L
Genetics Home Reference (NIH)SYCE1L
Genomic and cartography
GoldenPath hg38 (UCSC)SYCE1L  -     chr16:77199397-77213004 +  16q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYCE1L  -     16q23.1   [Description]    (hg19-Feb_2009)
EnsemblSYCE1L - 16q23.1 [CytoView hg19]  SYCE1L - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBISYCE1L [Mapview hg19]  SYCE1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC035731
RefSeq transcript (Entrez)NM_001129979 NM_001348924
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYCE1L
Cluster EST : UnigeneHs.734779 [ NCBI ]
CGAP (NCI)Hs.734779
Alternative Splicing GalleryENSG00000205078
Gene ExpressionSYCE1L [ NCBI-GEO ]   SYCE1L [ EBI - ARRAY_EXPRESS ]   SYCE1L [ SEEK ]   SYCE1L [ MEM ]
Gene Expression Viewer (FireBrowse)SYCE1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130958
GTEX Portal (Tissue expression)SYCE1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MT33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MT33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MT33
Splice isoforms : SwissVarA8MT33
PhosPhoSitePlusA8MT33
Domains : Interpro (EBI)SYCE1   
Domain families : Pfam (Sanger)SYCE1 (PF15233)   
Domain families : Pfam (NCBI)pfam15233   
Conserved Domain (NCBI)SYCE1L
DMDM Disease mutations100130958
Blocks (Seattle)SYCE1L
SuperfamilyA8MT33
Human Protein AtlasENSG00000205078
Peptide AtlasA8MT33
IPIIPI00873153   
Protein Interaction databases
DIP (DOE-UCLA)A8MT33
IntAct (EBI)A8MT33
FunCoupENSG00000205078
BioGRIDSYCE1L
STRING (EMBL)SYCE1L
ZODIACSYCE1L
Ontologies - Pathways
QuickGOA8MT33
Ontology : AmiGOsynaptonemal complex  synaptonemal complex assembly  intermediate filament cytoskeleton  
Ontology : EGO-EBIsynaptonemal complex  synaptonemal complex assembly  intermediate filament cytoskeleton  
NDEx NetworkSYCE1L
Atlas of Cancer Signalling NetworkSYCE1L
Wikipedia pathwaysSYCE1L
Orthology - Evolution
OrthoDB100130958
GeneTree (enSembl)ENSG00000205078
Phylogenetic Trees/Animal Genes : TreeFamSYCE1L
HOVERGENA8MT33
HOGENOMA8MT33
Homologs : HomoloGeneSYCE1L
Homology/Alignments : Family Browser (UCSC)SYCE1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYCE1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYCE1L
dbVarSYCE1L
ClinVarSYCE1L
1000_GenomesSYCE1L 
Exome Variant ServerSYCE1L
ExAC (Exome Aggregation Consortium)SYCE1L (select the gene name)
Genetic variants : HAPMAP100130958
Genomic Variants (DGV)SYCE1L [DGVbeta]
DECIPHERSYCE1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYCE1L 
Mutations
ICGC Data PortalSYCE1L 
TCGA Data PortalSYCE1L 
Broad Tumor PortalSYCE1L
OASIS PortalSYCE1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYCE1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYCE1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYCE1L
DgiDB (Drug Gene Interaction Database)SYCE1L
DoCM (Curated mutations)SYCE1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYCE1L (select a term)
intoGenSYCE1L
Cancer3DSYCE1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSYCE1L
Genetic Testing Registry SYCE1L
NextProtA8MT33 [Medical]
TSGene100130958
GENETestsSYCE1L
Target ValidationSYCE1L
Huge Navigator SYCE1L [HugePedia]
snp3D : Map Gene to Disease100130958
BioCentury BCIQSYCE1L
ClinGenSYCE1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130958
Chemical/Pharm GKB GenePA165450704
Clinical trialSYCE1L
Miscellaneous
canSAR (ICR)SYCE1L (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYCE1L
EVEXSYCE1L
GoPubMedSYCE1L
iHOPSYCE1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:44:37 CEST 2017

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