Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SYCE2 (synaptonemal complex central element protein 2)

Identity

Alias_symbol (synonym)CESC1
Other alias
HGNC (Hugo) SYCE2
LocusID (NCBI) 256126
Atlas_Id 74399
Location 19p13.13  [Link to chromosome band 19p13]
Location_base_pair Starts at 12899080 and ends at 12919272 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FARSA (19p13.2) / SYCE2 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYCE2   27411
Cards
Entrez_Gene (NCBI)SYCE2  256126  synaptonemal complex central element protein 2
AliasesCESC1
GeneCards (Weizmann)SYCE2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:12899080-12919272 [Contig_View]  SYCE2 [Vega]
TCGA cBioPortalSYCE2
AceView (NCBI)SYCE2
Genatlas (Paris)SYCE2
WikiGenes256126
SOURCE (Princeton)SYCE2
Genetics Home Reference (NIH)SYCE2
Genomic and cartography
GoldenPath hg38 (UCSC)SYCE2  -     chr19:12899080-12919272 -  19p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYCE2  -     19p13.13   [Description]    (hg19-Feb_2009)
EnsemblSYCE2 - 19p13.13 [CytoView hg19]  SYCE2 - 19p13.13 [CytoView hg38]
Mapping of homologs : NCBISYCE2 [Mapview hg19]  SYCE2 [Mapview hg38]
OMIM611487   
Gene and transcription
Genbank (Entrez)AK097443 AK302373 BC035819 BC172302 DB449708
RefSeq transcript (Entrez)NM_001105578
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYCE2
Cluster EST : UnigeneHs.655173 [ NCBI ]
CGAP (NCI)Hs.655173
Gene ExpressionSYCE2 [ NCBI-GEO ]   SYCE2 [ EBI - ARRAY_EXPRESS ]   SYCE2 [ SEEK ]   SYCE2 [ MEM ]
Gene Expression Viewer (FireBrowse)SYCE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256126
GTEX Portal (Tissue expression)SYCE2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PIF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PIF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PIF2
Splice isoforms : SwissVarQ6PIF2
PhosPhoSitePlusQ6PIF2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SYCE2
DMDM Disease mutations256126
Blocks (Seattle)SYCE2
SuperfamilyQ6PIF2
Peptide AtlasQ6PIF2
IPIIPI00158144   
Protein Interaction databases
DIP (DOE-UCLA)Q6PIF2
IntAct (EBI)Q6PIF2
BioGRIDSYCE2
STRING (EMBL)SYCE2
ZODIACSYCE2
Ontologies - Pathways
QuickGOQ6PIF2
Ontology : AmiGOcentral element  nucleus  synaptonemal complex assembly  cell division  
Ontology : EGO-EBIcentral element  nucleus  synaptonemal complex assembly  cell division  
NDEx NetworkSYCE2
Atlas of Cancer Signalling NetworkSYCE2
Wikipedia pathwaysSYCE2
Orthology - Evolution
OrthoDB256126
Phylogenetic Trees/Animal Genes : TreeFamSYCE2
HOVERGENQ6PIF2
HOGENOMQ6PIF2
Homologs : HomoloGeneSYCE2
Homology/Alignments : Family Browser (UCSC)SYCE2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYCE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYCE2
dbVarSYCE2
ClinVarSYCE2
1000_GenomesSYCE2 
Exome Variant ServerSYCE2
ExAC (Exome Aggregation Consortium)SYCE2 (select the gene name)
Genetic variants : HAPMAP256126
Genomic Variants (DGV)SYCE2 [DGVbeta]
DECIPHERSYCE2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYCE2 
Mutations
ICGC Data PortalSYCE2 
TCGA Data PortalSYCE2 
Broad Tumor PortalSYCE2
OASIS PortalSYCE2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYCE2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYCE2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SYCE2
DgiDB (Drug Gene Interaction Database)SYCE2
DoCM (Curated mutations)SYCE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYCE2 (select a term)
intoGenSYCE2
Cancer3DSYCE2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611487   
Orphanet
MedgenSYCE2
Genetic Testing Registry SYCE2
NextProtQ6PIF2 [Medical]
TSGene256126
GENETestsSYCE2
Huge Navigator SYCE2 [HugePedia]
snp3D : Map Gene to Disease256126
BioCentury BCIQSYCE2
ClinGenSYCE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256126
Chemical/Pharm GKB GenePA142670849
Clinical trialSYCE2
Miscellaneous
canSAR (ICR)SYCE2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYCE2
EVEXSYCE2
GoPubMedSYCE2
iHOPSYCE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:57:07 CEST 2017

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