Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SYCE3 (synaptonemal complex central element protein 3)

Identity

Alias_namesC22orf41
chromosome 22 open reading frame 41
Other aliasTHEG2
HGNC (Hugo) SYCE3
LocusID (NCBI) 644186
Atlas_Id 74400
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 50551112 and ends at 50562952 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYCE3   35245
Cards
Entrez_Gene (NCBI)SYCE3  644186  synaptonemal complex central element protein 3
AliasesC22orf41; THEG2
GeneCards (Weizmann)SYCE3
Ensembl hg19 (Hinxton)ENSG00000217442 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000217442 [Gene_View]  chr22:50551112-50562952 [Contig_View]  SYCE3 [Vega]
ICGC DataPortalENSG00000217442
TCGA cBioPortalSYCE3
AceView (NCBI)SYCE3
Genatlas (Paris)SYCE3
WikiGenes644186
SOURCE (Princeton)SYCE3
Genetics Home Reference (NIH)SYCE3
Genomic and cartography
GoldenPath hg38 (UCSC)SYCE3  -     chr22:50551112-50562952 -  22q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYCE3  -     22q13.33   [Description]    (hg19-Feb_2009)
EnsemblSYCE3 - 22q13.33 [CytoView hg19]  SYCE3 - 22q13.33 [CytoView hg38]
Mapping of homologs : NCBISYCE3 [Mapview hg19]  SYCE3 [Mapview hg38]
OMIM615775   
Gene and transcription
Genbank (Entrez)BC127859 BC127860 BQ027928 EU082028 HY041215
RefSeq transcript (Entrez)NM_001123225
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYCE3
Cluster EST : UnigeneHs.535660 [ NCBI ]
CGAP (NCI)Hs.535660
Alternative Splicing GalleryENSG00000217442
Gene ExpressionSYCE3 [ NCBI-GEO ]   SYCE3 [ EBI - ARRAY_EXPRESS ]   SYCE3 [ SEEK ]   SYCE3 [ MEM ]
Gene Expression Viewer (FireBrowse)SYCE3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644186
GTEX Portal (Tissue expression)SYCE3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1L190   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1L190  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1L190
Splice isoforms : SwissVarA1L190
PhosPhoSitePlusA1L190
Domains : Interpro (EBI)Synaptonemal_3   
Domain families : Pfam (Sanger)Synaptonemal_3 (PF15191)   
Domain families : Pfam (NCBI)pfam15191   
Conserved Domain (NCBI)SYCE3
DMDM Disease mutations644186
Blocks (Seattle)SYCE3
SuperfamilyA1L190
Human Protein AtlasENSG00000217442
Peptide AtlasA1L190
IPIIPI00879804   
Protein Interaction databases
DIP (DOE-UCLA)A1L190
IntAct (EBI)A1L190
FunCoupENSG00000217442
BioGRIDSYCE3
STRING (EMBL)SYCE3
ZODIACSYCE3
Ontologies - Pathways
QuickGOA1L190
Ontology : AmiGOcentral element  protein binding  nucleus  chromosome  synaptonemal complex assembly  reciprocal meiotic recombination  spermatogenesis  positive regulation of apoptotic process  cell division  
Ontology : EGO-EBIcentral element  protein binding  nucleus  chromosome  synaptonemal complex assembly  reciprocal meiotic recombination  spermatogenesis  positive regulation of apoptotic process  cell division  
NDEx NetworkSYCE3
Atlas of Cancer Signalling NetworkSYCE3
Wikipedia pathwaysSYCE3
Orthology - Evolution
OrthoDB644186
GeneTree (enSembl)ENSG00000217442
Phylogenetic Trees/Animal Genes : TreeFamSYCE3
HOVERGENA1L190
HOGENOMA1L190
Homologs : HomoloGeneSYCE3
Homology/Alignments : Family Browser (UCSC)SYCE3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYCE3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYCE3
dbVarSYCE3
ClinVarSYCE3
1000_GenomesSYCE3 
Exome Variant ServerSYCE3
ExAC (Exome Aggregation Consortium)SYCE3 (select the gene name)
Genetic variants : HAPMAP644186
Genomic Variants (DGV)SYCE3 [DGVbeta]
DECIPHERSYCE3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYCE3 
Mutations
ICGC Data PortalSYCE3 
TCGA Data PortalSYCE3 
Broad Tumor PortalSYCE3
OASIS PortalSYCE3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYCE3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYCE3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYCE3
DgiDB (Drug Gene Interaction Database)SYCE3
DoCM (Curated mutations)SYCE3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYCE3 (select a term)
intoGenSYCE3
Cancer3DSYCE3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615775   
Orphanet
MedgenSYCE3
Genetic Testing Registry SYCE3
NextProtA1L190 [Medical]
TSGene644186
GENETestsSYCE3
Target ValidationSYCE3
Huge Navigator SYCE3 [HugePedia]
snp3D : Map Gene to Disease644186
BioCentury BCIQSYCE3
ClinGenSYCE3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644186
Chemical/Pharm GKB GenePA164717081
Clinical trialSYCE3
Miscellaneous
canSAR (ICR)SYCE3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYCE3
EVEXSYCE3
GoPubMedSYCE3
iHOPSYCE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:44:38 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.