Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SYCE3 (synaptonemal complex central element protein 3)

Identity

Alias (NCBI)C22orf41
THEG2
HGNC (Hugo) SYCE3
HGNC Alias nametestis highly expressed protein 2
HGNC Previous nameC22orf41
HGNC Previous namechromosome 22 open reading frame 41
LocusID (NCBI) 644186
Atlas_Id 74400
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 50551112 and ends at 50562919 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SYCE3   35245
Cards
Entrez_Gene (NCBI)SYCE3    synaptonemal complex central element protein 3
AliasesC22orf41; THEG2
GeneCards (Weizmann)SYCE3
Ensembl hg19 (Hinxton)ENSG00000217442 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000217442 [Gene_View]  ENSG00000217442 [Sequence]  chr22:50551112-50562919 [Contig_View]  SYCE3 [Vega]
ICGC DataPortalENSG00000217442
TCGA cBioPortalSYCE3
AceView (NCBI)SYCE3
Genatlas (Paris)SYCE3
SOURCE (Princeton)SYCE3
Genetics Home Reference (NIH)SYCE3
Genomic and cartography
GoldenPath hg38 (UCSC)SYCE3  -     chr22:50551112-50562919 -  22q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYCE3  -     22q13.33   [Description]    (hg19-Feb_2009)
GoldenPathSYCE3 - 22q13.33 [CytoView hg19]  SYCE3 - 22q13.33 [CytoView hg38]
ImmunoBaseENSG00000217442
Genome Data Viewer NCBISYCE3 [Mapview hg19]  
OMIM615775   
Gene and transcription
Genbank (Entrez)BC127859 BC127860 BQ027928 EU082028 HY041215
RefSeq transcript (Entrez)NM_001123225
Consensus coding sequences : CCDS (NCBI)SYCE3
Gene ExpressionSYCE3 [ NCBI-GEO ]   SYCE3 [ EBI - ARRAY_EXPRESS ]   SYCE3 [ SEEK ]   SYCE3 [ MEM ]
Gene Expression Viewer (FireBrowse)SYCE3 [ Firebrowse - Broad ]
GenevisibleExpression of SYCE3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644186
GTEX Portal (Tissue expression)SYCE3
Human Protein AtlasENSG00000217442-SYCE3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1L190   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1L190  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1L190
PhosPhoSitePlusA1L190
Domains : Interpro (EBI)Synaptonemal_3   
Domain families : Pfam (Sanger)Synaptonemal_3 (PF15191)   
Domain families : Pfam (NCBI)pfam15191   
Conserved Domain (NCBI)SYCE3
SuperfamilyA1L190
AlphaFold pdb e-kbA1L190   
Human Protein Atlas [tissue]ENSG00000217442-SYCE3 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A1L190
IntAct (EBI)A1L190
BioGRIDSYCE3
STRING (EMBL)SYCE3
ZODIACSYCE3
Ontologies - Pathways
QuickGOA1L190
Ontology : AmiGOcentral element  central element  protein binding  nucleus  chromosome  synaptonemal complex assembly  synaptonemal complex assembly  reciprocal meiotic recombination  reciprocal meiotic recombination  spermatogenesis  positive regulation of apoptotic process  cell division  
Ontology : EGO-EBIcentral element  central element  protein binding  nucleus  chromosome  synaptonemal complex assembly  synaptonemal complex assembly  reciprocal meiotic recombination  reciprocal meiotic recombination  spermatogenesis  positive regulation of apoptotic process  cell division  
NDEx NetworkSYCE3
Atlas of Cancer Signalling NetworkSYCE3
Wikipedia pathwaysSYCE3
Orthology - Evolution
OrthoDB644186
GeneTree (enSembl)ENSG00000217442
Phylogenetic Trees/Animal Genes : TreeFamSYCE3
Homologs : HomoloGeneSYCE3
Homology/Alignments : Family Browser (UCSC)SYCE3
Gene fusions - Rearrangements
Fusion : QuiverSYCE3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYCE3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYCE3
dbVarSYCE3
ClinVarSYCE3
MonarchSYCE3
1000_GenomesSYCE3 
Exome Variant ServerSYCE3
GNOMAD BrowserENSG00000217442
Varsome BrowserSYCE3
ACMGSYCE3 variants
VarityA1L190
Genomic Variants (DGV)SYCE3 [DGVbeta]
DECIPHERSYCE3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYCE3 
Mutations
ICGC Data PortalSYCE3 
TCGA Data PortalSYCE3 
Broad Tumor PortalSYCE3
OASIS PortalSYCE3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYCE3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSYCE3
Mutations and Diseases : HGMDSYCE3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSYCE3
DgiDB (Drug Gene Interaction Database)SYCE3
DoCM (Curated mutations)SYCE3
CIViC (Clinical Interpretations of Variants in Cancer)SYCE3
Cancer3DSYCE3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615775   
Orphanet
DisGeNETSYCE3
MedgenSYCE3
Genetic Testing Registry SYCE3
NextProtA1L190 [Medical]
GENETestsSYCE3
Target ValidationSYCE3
Huge Navigator SYCE3 [HugePedia]
ClinGenSYCE3
Clinical trials, drugs, therapy
MyCancerGenomeSYCE3
Protein Interactions : CTDSYCE3
Pharm GKB GenePA164717081
PharosA1L190
Clinical trialSYCE3
Miscellaneous
canSAR (ICR)SYCE3
HarmonizomeSYCE3
DataMed IndexSYCE3
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSYCE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:24:38 CEST 2021

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