Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SYCN (syncollin)

Identity

Alias_namesINSSA1
insulin synthesis associated 1
Alias_symbol (synonym)SYL
FLJ27441
Other alias
HGNC (Hugo) SYCN
LocusID (NCBI) 342898
Atlas_Id 54054
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39693562 and ends at 39694906 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SYCN (19q13.2) / AK295707 ()SYCN (19q13.2) / USP32P1 (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYCN   18442
Cards
Entrez_Gene (NCBI)SYCN  342898  syncollin
AliasesINSSA1; SYL
GeneCards (Weizmann)SYCN
Ensembl hg19 (Hinxton)ENSG00000179751 [Gene_View]  chr19:39693562-39694906 [Contig_View]  SYCN [Vega]
Ensembl hg38 (Hinxton)ENSG00000179751 [Gene_View]  chr19:39693562-39694906 [Contig_View]  SYCN [Vega]
ICGC DataPortalENSG00000179751
TCGA cBioPortalSYCN
AceView (NCBI)SYCN
Genatlas (Paris)SYCN
WikiGenes342898
SOURCE (Princeton)SYCN
Genetics Home Reference (NIH)SYCN
Genomic and cartography
GoldenPath hg19 (UCSC)SYCN  -     chr19:39693562-39694906 -  19q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SYCN  -     19q13.2   [Description]    (hg38-Dec_2013)
EnsemblSYCN - 19q13.2 [CytoView hg19]  SYCN - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBISYCN [Mapview hg19]  SYCN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK130951 BC039541 BC121075 BC121076
RefSeq transcript (Entrez)NM_001080468
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)SYCN
Cluster EST : UnigeneHs.124123 [ NCBI ]
CGAP (NCI)Hs.124123
Alternative Splicing GalleryENSG00000179751
Gene ExpressionSYCN [ NCBI-GEO ]   SYCN [ EBI - ARRAY_EXPRESS ]   SYCN [ SEEK ]   SYCN [ MEM ]
Gene Expression Viewer (FireBrowse)SYCN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342898
GTEX Portal (Tissue expression)SYCN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VAF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VAF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VAF6
Splice isoforms : SwissVarQ0VAF6
PhosPhoSitePlusQ0VAF6
Domains : Interpro (EBI)Syncollin   
Domain families : Pfam (Sanger)Syncollin (PF15138)   
Domain families : Pfam (NCBI)pfam15138   
Conserved Domain (NCBI)SYCN
DMDM Disease mutations342898
Blocks (Seattle)SYCN
SuperfamilyQ0VAF6
Human Protein AtlasENSG00000179751
Peptide AtlasQ0VAF6
IPIIPI00397717   
Protein Interaction databases
DIP (DOE-UCLA)Q0VAF6
IntAct (EBI)Q0VAF6
FunCoupENSG00000179751
BioGRIDSYCN
STRING (EMBL)SYCN
ZODIACSYCN
Ontologies - Pathways
QuickGOQ0VAF6
Ontology : AmiGOexocytosis  transport vesicle membrane  secretory granule membrane  
Ontology : EGO-EBIexocytosis  transport vesicle membrane  secretory granule membrane  
NDEx NetworkSYCN
Atlas of Cancer Signalling NetworkSYCN
Wikipedia pathwaysSYCN
Orthology - Evolution
OrthoDB342898
GeneTree (enSembl)ENSG00000179751
Phylogenetic Trees/Animal Genes : TreeFamSYCN
HOVERGENQ0VAF6
HOGENOMQ0VAF6
Homologs : HomoloGeneSYCN
Homology/Alignments : Family Browser (UCSC)SYCN
Gene fusions - Rearrangements
Fusion Cancer (Beijing)SYCN [19q13.2]  -  AK295707 [FUSC004261]
Fusion Cancer (Beijing)SYCN [19q13.2]  -  USP32P1 [17p11.2]  [FUSC004262]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYCN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYCN
dbVarSYCN
ClinVarSYCN
1000_GenomesSYCN 
Exome Variant ServerSYCN
ExAC (Exome Aggregation Consortium)SYCN (select the gene name)
Genetic variants : HAPMAP342898
Genomic Variants (DGV)SYCN [DGVbeta]
DECIPHER (Syndromes)19:39693562-39694906  ENSG00000179751
CONAN: Copy Number AnalysisSYCN 
Mutations
ICGC Data PortalSYCN 
TCGA Data PortalSYCN 
Broad Tumor PortalSYCN
OASIS PortalSYCN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYCN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYCN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYCN
DgiDB (Drug Gene Interaction Database)SYCN
DoCM (Curated mutations)SYCN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYCN (select a term)
intoGenSYCN
Cancer3DSYCN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSYCN
Genetic Testing Registry SYCN
NextProtQ0VAF6 [Medical]
TSGene342898
GENETestsSYCN
Huge Navigator SYCN [HugePedia]
snp3D : Map Gene to Disease342898
BioCentury BCIQSYCN
ClinGenSYCN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342898
Chemical/Pharm GKB GenePA142670850
Clinical trialSYCN
Miscellaneous
canSAR (ICR)SYCN (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYCN
EVEXSYCN
GoPubMedSYCN
iHOPSYCN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:30:01 CET 2017

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