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SYCP2 (synaptonemal complex protein 2)

Identity

Alias_symbol (synonym)SCP2
Other aliasSCP-2
HGNC (Hugo) SYCP2
LocusID (NCBI) 10388
Atlas_Id 55846
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 59863557 and ends at 59933663 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADNP (20q13.13) / SYCP2 (20q13.33)DENND4A (15q22.31) / SYCP2 (20q13.33)ERC1 (12p13.33) / SYCP2 (20q13.33)
SYCP2 (20q13.33) / ZMYND8 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYCP2   11490
Cards
Entrez_Gene (NCBI)SYCP2  10388  synaptonemal complex protein 2
AliasesSCP-2; SCP2
GeneCards (Weizmann)SYCP2
Ensembl hg19 (Hinxton)ENSG00000196074 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196074 [Gene_View]  chr20:59863557-59933663 [Contig_View]  SYCP2 [Vega]
ICGC DataPortalENSG00000196074
TCGA cBioPortalSYCP2
AceView (NCBI)SYCP2
Genatlas (Paris)SYCP2
WikiGenes10388
SOURCE (Princeton)SYCP2
Genetics Home Reference (NIH)SYCP2
Genomic and cartography
GoldenPath hg38 (UCSC)SYCP2  -     chr20:59863557-59933663 -  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYCP2  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblSYCP2 - 20q13.33 [CytoView hg19]  SYCP2 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBISYCP2 [Mapview hg19]  SYCP2 [Mapview hg38]
OMIM604105   
Gene and transcription
Genbank (Entrez)AK308889 AL080226 BC040566 BC132864 BC132870
RefSeq transcript (Entrez)NM_014258
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYCP2
Cluster EST : UnigeneHs.202676 [ NCBI ]
CGAP (NCI)Hs.202676
Alternative Splicing GalleryENSG00000196074
Gene ExpressionSYCP2 [ NCBI-GEO ]   SYCP2 [ EBI - ARRAY_EXPRESS ]   SYCP2 [ SEEK ]   SYCP2 [ MEM ]
Gene Expression Viewer (FireBrowse)SYCP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10388
GTEX Portal (Tissue expression)SYCP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BX26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BX26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BX26
Splice isoforms : SwissVarQ9BX26
PhosPhoSitePlusQ9BX26
Domains : Interpro (EBI)SYCP1/2    SYCP2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SYCP2
DMDM Disease mutations10388
Blocks (Seattle)SYCP2
SuperfamilyQ9BX26
Human Protein AtlasENSG00000196074
Peptide AtlasQ9BX26
HPRD06822
IPIIPI00306718   IPI00793345   IPI00789850   IPI00792691   
Protein Interaction databases
DIP (DOE-UCLA)Q9BX26
IntAct (EBI)Q9BX26
FunCoupENSG00000196074
BioGRIDSYCP2
STRING (EMBL)SYCP2
ZODIACSYCP2
Ontologies - Pathways
QuickGOQ9BX26
Ontology : AmiGOsynaptonemal complex  lateral element  DNA binding  nucleus  synaptonemal complex assembly  male meiotic nuclear division  female meiotic nuclear division  fertilization  negative regulation of apoptotic process  protein heterodimerization activity  male genitalia morphogenesis  cell division  
Ontology : EGO-EBIsynaptonemal complex  lateral element  DNA binding  nucleus  synaptonemal complex assembly  male meiotic nuclear division  female meiotic nuclear division  fertilization  negative regulation of apoptotic process  protein heterodimerization activity  male genitalia morphogenesis  cell division  
NDEx NetworkSYCP2
Atlas of Cancer Signalling NetworkSYCP2
Wikipedia pathwaysSYCP2
Orthology - Evolution
OrthoDB10388
GeneTree (enSembl)ENSG00000196074
Phylogenetic Trees/Animal Genes : TreeFamSYCP2
HOVERGENQ9BX26
HOGENOMQ9BX26
Homologs : HomoloGeneSYCP2
Homology/Alignments : Family Browser (UCSC)SYCP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYCP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYCP2
dbVarSYCP2
ClinVarSYCP2
1000_GenomesSYCP2 
Exome Variant ServerSYCP2
ExAC (Exome Aggregation Consortium)SYCP2 (select the gene name)
Genetic variants : HAPMAP10388
Genomic Variants (DGV)SYCP2 [DGVbeta]
DECIPHERSYCP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYCP2 
Mutations
ICGC Data PortalSYCP2 
TCGA Data PortalSYCP2 
Broad Tumor PortalSYCP2
OASIS PortalSYCP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYCP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYCP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYCP2
DgiDB (Drug Gene Interaction Database)SYCP2
DoCM (Curated mutations)SYCP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYCP2 (select a term)
intoGenSYCP2
Cancer3DSYCP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604105   
Orphanet
MedgenSYCP2
Genetic Testing Registry SYCP2
NextProtQ9BX26 [Medical]
TSGene10388
GENETestsSYCP2
Target ValidationSYCP2
Huge Navigator SYCP2 [HugePedia]
snp3D : Map Gene to Disease10388
BioCentury BCIQSYCP2
ClinGenSYCP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10388
Chemical/Pharm GKB GenePA36272
Clinical trialSYCP2
Miscellaneous
canSAR (ICR)SYCP2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYCP2
EVEXSYCP2
GoPubMedSYCP2
iHOPSYCP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:33:53 CEST 2017

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