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SYCP2L (synaptonemal complex protein 2 like)

Identity

Alias (NCBI)C6orf177
NO145
dJ62D2.1
HGNC (Hugo) SYCP2L
HGNC Alias symbdJ62D2.1
NO145
HGNC Previous nameC6orf177
HGNC Previous namechromosome 6 open reading frame 177
 synaptonemal complex protein 2-like
LocusID (NCBI) 221711
Atlas_Id 74402
Location 6p24.2  [Link to chromosome band 6p24]
Location_base_pair Starts at 10886831 and ends at 10974308 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYCP2L   21537
Cards
Entrez_Gene (NCBI)SYCP2L  221711  synaptonemal complex protein 2 like
AliasesC6orf177; NO145; dJ62D2.1
GeneCards (Weizmann)SYCP2L
Ensembl hg19 (Hinxton)ENSG00000153157 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153157 [Gene_View]  ENSG00000153157 [Sequence]  chr6:10886831-10974308 [Contig_View]  SYCP2L [Vega]
ICGC DataPortalENSG00000153157
TCGA cBioPortalSYCP2L
AceView (NCBI)SYCP2L
Genatlas (Paris)SYCP2L
WikiGenes221711
SOURCE (Princeton)SYCP2L
Genetics Home Reference (NIH)SYCP2L
Genomic and cartography
GoldenPath hg38 (UCSC)SYCP2L  -     chr6:10886831-10974308 +  6p24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYCP2L  -     6p24.2   [Description]    (hg19-Feb_2009)
GoldenPathSYCP2L - 6p24.2 [CytoView hg19]  SYCP2L - 6p24.2 [CytoView hg38]
ImmunoBaseENSG00000153157
genome Data Viewer NCBISYCP2L [Mapview hg19]  
OMIM616799   
Gene and transcription
Genbank (Entrez)AI027433 AK128130 AM293674 BC012225 DA620756
RefSeq transcript (Entrez)NM_001040274 NM_194299
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYCP2L
Alternative Splicing GalleryENSG00000153157
Gene ExpressionSYCP2L [ NCBI-GEO ]   SYCP2L [ EBI - ARRAY_EXPRESS ]   SYCP2L [ SEEK ]   SYCP2L [ MEM ]
Gene Expression Viewer (FireBrowse)SYCP2L [ Firebrowse - Broad ]
GenevisibleExpression of SYCP2L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221711
GTEX Portal (Tissue expression)SYCP2L
Human Protein AtlasENSG00000153157-SYCP2L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T4T6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T4T6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T4T6
Splice isoforms : SwissVarQ5T4T6
PhosPhoSitePlusQ5T4T6
Domains : Interpro (EBI)SYCP1/2    SYCP2_ARLD    SYCP2_SLD   
Domain families : Pfam (Sanger)SYCP2_ARLD (PF18581)    SYCP2_SLD (PF18584)   
Domain families : Pfam (NCBI)pfam18581    pfam18584   
Conserved Domain (NCBI)SYCP2L
DMDM Disease mutations221711
Blocks (Seattle)SYCP2L
SuperfamilyQ5T4T6
Human Protein Atlas [tissue]ENSG00000153157-SYCP2L [tissue]
Peptide AtlasQ5T4T6
HPRD11248
IPIIPI00514533   IPI00892582   IPI01012966   IPI00945102   
Protein Interaction databases
DIP (DOE-UCLA)Q5T4T6
IntAct (EBI)Q5T4T6
FunCoupENSG00000153157
BioGRIDSYCP2L
STRING (EMBL)SYCP2L
ZODIACSYCP2L
Ontologies - Pathways
QuickGOQ5T4T6
Ontology : AmiGOcondensed nuclear chromosome, centromeric region  nucleoplasm  
Ontology : EGO-EBIcondensed nuclear chromosome, centromeric region  nucleoplasm  
NDEx NetworkSYCP2L
Atlas of Cancer Signalling NetworkSYCP2L
Wikipedia pathwaysSYCP2L
Orthology - Evolution
OrthoDB221711
GeneTree (enSembl)ENSG00000153157
Phylogenetic Trees/Animal Genes : TreeFamSYCP2L
HOGENOMQ5T4T6
Homologs : HomoloGeneSYCP2L
Homology/Alignments : Family Browser (UCSC)SYCP2L
Gene fusions - Rearrangements
Fusion : QuiverSYCP2L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYCP2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYCP2L
dbVarSYCP2L
ClinVarSYCP2L
1000_GenomesSYCP2L 
Exome Variant ServerSYCP2L
GNOMAD BrowserENSG00000153157
Varsome BrowserSYCP2L
Genetic variants : HAPMAP221711
Genomic Variants (DGV)SYCP2L [DGVbeta]
DECIPHERSYCP2L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYCP2L 
Mutations
ICGC Data PortalSYCP2L 
TCGA Data PortalSYCP2L 
Broad Tumor PortalSYCP2L
OASIS PortalSYCP2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYCP2L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSYCP2L
Mutations and Diseases : HGMDSYCP2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYCP2L
DgiDB (Drug Gene Interaction Database)SYCP2L
DoCM (Curated mutations)SYCP2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYCP2L (select a term)
intoGenSYCP2L
Cancer3DSYCP2L(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616799   
Orphanet
DisGeNETSYCP2L
MedgenSYCP2L
Genetic Testing Registry SYCP2L
NextProtQ5T4T6 [Medical]
TSGene221711
GENETestsSYCP2L
Target ValidationSYCP2L
Huge Navigator SYCP2L [HugePedia]
snp3D : Map Gene to Disease221711
BioCentury BCIQSYCP2L
ClinGenSYCP2L
Clinical trials, drugs, therapy
Protein Interactions : CTD221711
Pharm GKB GenePA162405118
Clinical trialSYCP2L
Miscellaneous
canSAR (ICR)SYCP2L (select the gene name)
HarmonizomeSYCP2L
DataMed IndexSYCP2L
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYCP2L
EVEXSYCP2L
GoPubMedSYCP2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:37:13 CEST 2020

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