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SYCP3 (synaptonemal complex protein 3)

Identity

Other aliasCOR1
RPRGL4
SCP3
SPGF4
HGNC (Hugo) SYCP3
LocusID (NCBI) 50511
Atlas_Id 51478
Location 12q23.2  [Link to chromosome band 12q23]
Location_base_pair Starts at 102122426 and ends at 102133250 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYCP3   18130
Cards
Entrez_Gene (NCBI)SYCP3  50511  synaptonemal complex protein 3
AliasesCOR1; RPRGL4; SCP3; SPGF4
GeneCards (Weizmann)SYCP3
Ensembl hg19 (Hinxton)ENSG00000139351 [Gene_View]  chr12:102122426-102133250 [Contig_View]  SYCP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000139351 [Gene_View]  chr12:102122426-102133250 [Contig_View]  SYCP3 [Vega]
ICGC DataPortalENSG00000139351
TCGA cBioPortalSYCP3
AceView (NCBI)SYCP3
Genatlas (Paris)SYCP3
WikiGenes50511
SOURCE (Princeton)SYCP3
Genetics Home Reference (NIH)SYCP3
Genomic and cartography
GoldenPath hg19 (UCSC)SYCP3  -     chr12:102122426-102133250 -  12q23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SYCP3  -     12q23.2   [Description]    (hg38-Dec_2013)
EnsemblSYCP3 - 12q23.2 [CytoView hg19]  SYCP3 - 12q23.2 [CytoView hg38]
Mapping of homologs : NCBISYCP3 [Mapview hg19]  SYCP3 [Mapview hg38]
OMIM270960   604759   
Gene and transcription
Genbank (Entrez)AF492003 AF517774 AI015251 AK125930 BC062662
RefSeq transcript (Entrez)NM_001177948 NM_001177949 NM_153694
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_021181 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)SYCP3
Cluster EST : UnigeneHs.506504 [ NCBI ]
CGAP (NCI)Hs.506504
Alternative Splicing GalleryENSG00000139351
Gene ExpressionSYCP3 [ NCBI-GEO ]   SYCP3 [ EBI - ARRAY_EXPRESS ]   SYCP3 [ SEEK ]   SYCP3 [ MEM ]
Gene Expression Viewer (FireBrowse)SYCP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50511
GTEX Portal (Tissue expression)SYCP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZU3
Splice isoforms : SwissVarQ8IZU3
PhosPhoSitePlusQ8IZU3
Domains : Interpro (EBI)XLR/SYCP3/FAM9_dom   
Domain families : Pfam (Sanger)Cor1 (PF04803)   
Domain families : Pfam (NCBI)pfam04803   
Conserved Domain (NCBI)SYCP3
DMDM Disease mutations50511
Blocks (Seattle)SYCP3
PDB (SRS)4CPC   
PDB (PDBSum)4CPC   
PDB (IMB)4CPC   
PDB (RSDB)4CPC   
Structural Biology KnowledgeBase4CPC   
SCOP (Structural Classification of Proteins)4CPC   
CATH (Classification of proteins structures)4CPC   
SuperfamilyQ8IZU3
Human Protein AtlasENSG00000139351
Peptide AtlasQ8IZU3
HPRD07265
IPIIPI00218078   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZU3
IntAct (EBI)Q8IZU3
FunCoupENSG00000139351
BioGRIDSYCP3
STRING (EMBL)SYCP3
ZODIACSYCP3
Ontologies - Pathways
QuickGOQ8IZU3
Ontology : AmiGOchromosome, centromeric region  lateral element  DNA binding  nucleus  male meiosis I  spermatogenesis, exchange of chromosomal proteins  cell division  
Ontology : EGO-EBIchromosome, centromeric region  lateral element  DNA binding  nucleus  male meiosis I  spermatogenesis, exchange of chromosomal proteins  cell division  
NDEx NetworkSYCP3
Atlas of Cancer Signalling NetworkSYCP3
Wikipedia pathwaysSYCP3
Orthology - Evolution
OrthoDB50511
GeneTree (enSembl)ENSG00000139351
Phylogenetic Trees/Animal Genes : TreeFamSYCP3
HOVERGENQ8IZU3
HOGENOMQ8IZU3
Homologs : HomoloGeneSYCP3
Homology/Alignments : Family Browser (UCSC)SYCP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYCP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYCP3
dbVarSYCP3
ClinVarSYCP3
1000_GenomesSYCP3 
Exome Variant ServerSYCP3
ExAC (Exome Aggregation Consortium)SYCP3 (select the gene name)
Genetic variants : HAPMAP50511
Genomic Variants (DGV)SYCP3 [DGVbeta]
DECIPHER (Syndromes)12:102122426-102133250  ENSG00000139351
CONAN: Copy Number AnalysisSYCP3 
Mutations
ICGC Data PortalSYCP3 
TCGA Data PortalSYCP3 
Broad Tumor PortalSYCP3
OASIS PortalSYCP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYCP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYCP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYCP3
DgiDB (Drug Gene Interaction Database)SYCP3
DoCM (Curated mutations)SYCP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYCP3 (select a term)
intoGenSYCP3
Cancer3DSYCP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM270960    604759   
Orphanet22774   
MedgenSYCP3
Genetic Testing Registry SYCP3
NextProtQ8IZU3 [Medical]
TSGene50511
GENETestsSYCP3
Huge Navigator SYCP3 [HugePedia]
snp3D : Map Gene to Disease50511
BioCentury BCIQSYCP3
ClinGenSYCP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50511
Chemical/Pharm GKB GenePA38298
Clinical trialSYCP3
Miscellaneous
canSAR (ICR)SYCP3 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYCP3
EVEXSYCP3
GoPubMedSYCP3
iHOPSYCP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:30:02 CET 2017

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