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SYDE1 (synapse defective 1, Rho GTPase, homolog 1 (C. elegans))

Identity

Alias_namessynapse defective 1, Rho GTPase, homolog 1 (C. elegans)
Alias_symbol (synonym)7h3
FLJ13511
SYD1
Other alias
HGNC (Hugo) SYDE1
LocusID (NCBI) 85360
Atlas_Id 74403
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 15218175 and ends at 15225799 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ILVBL (19p13.12) / SYDE1 (19p13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYDE1   25824
Cards
Entrez_Gene (NCBI)SYDE1  85360  synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
Aliases7h3
GeneCards (Weizmann)SYDE1
Ensembl hg19 (Hinxton)ENSG00000105137 [Gene_View]  chr19:15218175-15225799 [Contig_View]  SYDE1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105137 [Gene_View]  chr19:15218175-15225799 [Contig_View]  SYDE1 [Vega]
ICGC DataPortalENSG00000105137
TCGA cBioPortalSYDE1
AceView (NCBI)SYDE1
Genatlas (Paris)SYDE1
WikiGenes85360
SOURCE (Princeton)SYDE1
Genetics Home Reference (NIH)SYDE1
Genomic and cartography
GoldenPath hg19 (UCSC)SYDE1  -     chr19:15218175-15225799 +  19p13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SYDE1  -     19p13.12   [Description]    (hg38-Dec_2013)
EnsemblSYDE1 - 19p13.12 [CytoView hg19]  SYDE1 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBISYDE1 [Mapview hg19]  SYDE1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF209931 AK023573 AK123686 AK128870 AK315453
RefSeq transcript (Entrez)NM_001300910 NM_033025
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)SYDE1
Cluster EST : UnigeneHs.706845 [ NCBI ]
CGAP (NCI)Hs.706845
Alternative Splicing GalleryENSG00000105137
Gene ExpressionSYDE1 [ NCBI-GEO ]   SYDE1 [ EBI - ARRAY_EXPRESS ]   SYDE1 [ SEEK ]   SYDE1 [ MEM ]
Gene Expression Viewer (FireBrowse)SYDE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85360
GTEX Portal (Tissue expression)SYDE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZW31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZW31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZW31
Splice isoforms : SwissVarQ6ZW31
PhosPhoSitePlusQ6ZW31
Domaine pattern : Prosite (Expaxy)RHOGAP (PS50238)   
Domains : Interpro (EBI)Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam00620   
Domain families : Smart (EMBL)RhoGAP (SM00324)  
Conserved Domain (NCBI)SYDE1
DMDM Disease mutations85360
Blocks (Seattle)SYDE1
SuperfamilyQ6ZW31
Human Protein AtlasENSG00000105137
Peptide AtlasQ6ZW31
HPRD07830
IPIIPI00793111   IPI00171137   IPI00384701   IPI00005621   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZW31
IntAct (EBI)Q6ZW31
FunCoupENSG00000105137
BioGRIDSYDE1
STRING (EMBL)SYDE1
ZODIACSYDE1
Ontologies - Pathways
QuickGOQ6ZW31
Ontology : AmiGOGTPase activator activity  cytosol  synaptonemal complex assembly  small GTPase mediated signal transduction  synaptic vesicle docking  protein complex binding  cerebellar mossy fiber  positive regulation of synaptic transmission  regulation of small GTPase mediated signal transduction  activation of GTPase activity  synaptic membrane  
Ontology : EGO-EBIGTPase activator activity  cytosol  synaptonemal complex assembly  small GTPase mediated signal transduction  synaptic vesicle docking  protein complex binding  cerebellar mossy fiber  positive regulation of synaptic transmission  regulation of small GTPase mediated signal transduction  activation of GTPase activity  synaptic membrane  
NDEx NetworkSYDE1
Atlas of Cancer Signalling NetworkSYDE1
Wikipedia pathwaysSYDE1
Orthology - Evolution
OrthoDB85360
GeneTree (enSembl)ENSG00000105137
Phylogenetic Trees/Animal Genes : TreeFamSYDE1
HOVERGENQ6ZW31
HOGENOMQ6ZW31
Homologs : HomoloGeneSYDE1
Homology/Alignments : Family Browser (UCSC)SYDE1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYDE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYDE1
dbVarSYDE1
ClinVarSYDE1
1000_GenomesSYDE1 
Exome Variant ServerSYDE1
ExAC (Exome Aggregation Consortium)SYDE1 (select the gene name)
Genetic variants : HAPMAP85360
Genomic Variants (DGV)SYDE1 [DGVbeta]
DECIPHER (Syndromes)19:15218175-15225799  ENSG00000105137
CONAN: Copy Number AnalysisSYDE1 
Mutations
ICGC Data PortalSYDE1 
TCGA Data PortalSYDE1 
Broad Tumor PortalSYDE1
OASIS PortalSYDE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYDE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYDE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYDE1
DgiDB (Drug Gene Interaction Database)SYDE1
DoCM (Curated mutations)SYDE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYDE1 (select a term)
intoGenSYDE1
Cancer3DSYDE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSYDE1
Genetic Testing Registry SYDE1
NextProtQ6ZW31 [Medical]
TSGene85360
GENETestsSYDE1
Huge Navigator SYDE1 [HugePedia]
snp3D : Map Gene to Disease85360
BioCentury BCIQSYDE1
ClinGenSYDE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85360
Chemical/Pharm GKB GenePA142670851
Clinical trialSYDE1
Miscellaneous
canSAR (ICR)SYDE1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYDE1
EVEXSYDE1
GoPubMedSYDE1
iHOPSYDE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:11 CET 2017

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