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SYDE2 (synapse defective Rho GTPase homolog 2)

Identity

Alias_namessynapse defective 1, Rho GTPase, homolog 2 (C. elegans)
Alias_symbol (synonym)FLJ13815
Other alias-
HGNC (Hugo) SYDE2
LocusID (NCBI) 84144
Atlas_Id 74404
Location 1p22.3  [Link to chromosome band 1p22]
Location_base_pair Starts at 85157673 and ends at 85201045 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SYDE2 (1p22.3) / SYDE2 (1p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYDE2   25841
Cards
Entrez_Gene (NCBI)SYDE2  84144  synapse defective Rho GTPase homolog 2
Aliases
GeneCards (Weizmann)SYDE2
Ensembl hg19 (Hinxton)ENSG00000097096 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000097096 [Gene_View]  chr1:85157673-85201045 [Contig_View]  SYDE2 [Vega]
ICGC DataPortalENSG00000097096
TCGA cBioPortalSYDE2
AceView (NCBI)SYDE2
Genatlas (Paris)SYDE2
WikiGenes84144
SOURCE (Princeton)SYDE2
Genetics Home Reference (NIH)SYDE2
Genomic and cartography
GoldenPath hg38 (UCSC)SYDE2  -     chr1:85157673-85201045 -  1p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYDE2  -     1p22.3   [Description]    (hg19-Feb_2009)
EnsemblSYDE2 - 1p22.3 [CytoView hg19]  SYDE2 - 1p22.3 [CytoView hg38]
Mapping of homologs : NCBISYDE2 [Mapview hg19]  SYDE2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF085890 AK075186 AL834286
RefSeq transcript (Entrez)NM_032184
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYDE2
Cluster EST : UnigeneHs.729233 [ NCBI ]
CGAP (NCI)Hs.729233
Alternative Splicing GalleryENSG00000097096
Gene ExpressionSYDE2 [ NCBI-GEO ]   SYDE2 [ EBI - ARRAY_EXPRESS ]   SYDE2 [ SEEK ]   SYDE2 [ MEM ]
Gene Expression Viewer (FireBrowse)SYDE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84144
GTEX Portal (Tissue expression)SYDE2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VT97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VT97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VT97
Splice isoforms : SwissVarQ5VT97
PhosPhoSitePlusQ5VT97
Domaine pattern : Prosite (Expaxy)RHOGAP (PS50238)   
Domains : Interpro (EBI)C2_dom    Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam00620   
Domain families : Smart (EMBL)RhoGAP (SM00324)  
Conserved Domain (NCBI)SYDE2
DMDM Disease mutations84144
Blocks (Seattle)SYDE2
SuperfamilyQ5VT97
Human Protein AtlasENSG00000097096
Peptide AtlasQ5VT97
IPIIPI00853256   IPI00550700   
Protein Interaction databases
DIP (DOE-UCLA)Q5VT97
IntAct (EBI)Q5VT97
FunCoupENSG00000097096
BioGRIDSYDE2
STRING (EMBL)SYDE2
ZODIACSYDE2
Ontologies - Pathways
QuickGOQ5VT97
Ontology : AmiGOGTPase activator activity  GTPase activator activity  cytoplasm  cytosol  signal transduction  regulation of GTPase activity  regulation of small GTPase mediated signal transduction  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  GTPase activator activity  cytoplasm  cytosol  signal transduction  regulation of GTPase activity  regulation of small GTPase mediated signal transduction  activation of GTPase activity  
NDEx NetworkSYDE2
Atlas of Cancer Signalling NetworkSYDE2
Wikipedia pathwaysSYDE2
Orthology - Evolution
OrthoDB84144
GeneTree (enSembl)ENSG00000097096
Phylogenetic Trees/Animal Genes : TreeFamSYDE2
HOVERGENQ5VT97
HOGENOMQ5VT97
Homologs : HomoloGeneSYDE2
Homology/Alignments : Family Browser (UCSC)SYDE2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYDE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYDE2
dbVarSYDE2
ClinVarSYDE2
1000_GenomesSYDE2 
Exome Variant ServerSYDE2
ExAC (Exome Aggregation Consortium)SYDE2 (select the gene name)
Genetic variants : HAPMAP84144
Genomic Variants (DGV)SYDE2 [DGVbeta]
DECIPHERSYDE2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYDE2 
Mutations
ICGC Data PortalSYDE2 
TCGA Data PortalSYDE2 
Broad Tumor PortalSYDE2
OASIS PortalSYDE2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYDE2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYDE2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYDE2
DgiDB (Drug Gene Interaction Database)SYDE2
DoCM (Curated mutations)SYDE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYDE2 (select a term)
intoGenSYDE2
Cancer3DSYDE2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSYDE2
Genetic Testing Registry SYDE2
NextProtQ5VT97 [Medical]
TSGene84144
GENETestsSYDE2
Target ValidationSYDE2
Huge Navigator SYDE2 [HugePedia]
snp3D : Map Gene to Disease84144
BioCentury BCIQSYDE2
ClinGenSYDE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84144
Chemical/Pharm GKB GenePA142670852
Clinical trialSYDE2
Miscellaneous
canSAR (ICR)SYDE2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYDE2
EVEXSYDE2
GoPubMedSYDE2
iHOPSYDE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:44:38 CEST 2017

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