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SYF2 (SYF2 pre-mRNA splicing factor)

Identity

Alias_namesCBPIN
CCNDBP1 interactor
SYF2 homolog, RNA splicing factor (S. cerevisiae)
Alias_symbol (synonym)p29
DKFZp564O2082
NTC31
fSAP29
Other aliasP29
HGNC (Hugo) SYF2
LocusID (NCBI) 25949
Atlas_Id 55012
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 25222276 and ends at 25232522 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYF2   19824
Cards
Entrez_Gene (NCBI)SYF2  25949  SYF2 pre-mRNA splicing factor
AliasesCBPIN; NTC31; P29; fSAP29
GeneCards (Weizmann)SYF2
Ensembl hg19 (Hinxton)ENSG00000117614 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117614 [Gene_View]  chr1:25222276-25232522 [Contig_View]  SYF2 [Vega]
ICGC DataPortalENSG00000117614
TCGA cBioPortalSYF2
AceView (NCBI)SYF2
Genatlas (Paris)SYF2
WikiGenes25949
SOURCE (Princeton)SYF2
Genetics Home Reference (NIH)SYF2
Genomic and cartography
GoldenPath hg38 (UCSC)SYF2  -     chr1:25222276-25232522 -  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYF2  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblSYF2 - 1p36.11 [CytoView hg19]  SYF2 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBISYF2 [Mapview hg19]  SYF2 [Mapview hg38]
OMIM607090   
Gene and transcription
Genbank (Entrez)AF273089 AI311782 AK303582 AK314859 AL080166
RefSeq transcript (Entrez)NM_015484 NM_207170
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYF2
Cluster EST : UnigeneHs.20013 [ NCBI ]
CGAP (NCI)Hs.20013
Alternative Splicing GalleryENSG00000117614
Gene ExpressionSYF2 [ NCBI-GEO ]   SYF2 [ EBI - ARRAY_EXPRESS ]   SYF2 [ SEEK ]   SYF2 [ MEM ]
Gene Expression Viewer (FireBrowse)SYF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25949
GTEX Portal (Tissue expression)SYF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95926   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95926  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95926
Splice isoforms : SwissVarO95926
PhosPhoSitePlusO95926
Domains : Interpro (EBI)mRNA_splic_SYF2   
Domain families : Pfam (Sanger)SYF2 (PF08231)   
Domain families : Pfam (NCBI)pfam08231   
Conserved Domain (NCBI)SYF2
DMDM Disease mutations25949
Blocks (Seattle)SYF2
SuperfamilyO95926
Human Protein AtlasENSG00000117614
Peptide AtlasO95926
HPRD07386
IPIIPI00022963   IPI00410388   
Protein Interaction databases
DIP (DOE-UCLA)O95926
IntAct (EBI)O95926
FunCoupENSG00000117614
BioGRIDSYF2
STRING (EMBL)SYF2
ZODIACSYF2
Ontologies - Pathways
QuickGOO95926
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  Prp19 complex  in utero embryonic development  RNA binding  protein binding  nucleus  nucleus  nucleoplasm  mitotic G2 DNA damage checkpoint  gastrulation  positive regulation of cell proliferation  nuclear speck  embryonic organ development  catalytic step 2 spliceosome  post-mRNA release spliceosomal complex  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  Prp19 complex  in utero embryonic development  RNA binding  protein binding  nucleus  nucleus  nucleoplasm  mitotic G2 DNA damage checkpoint  gastrulation  positive regulation of cell proliferation  nuclear speck  embryonic organ development  catalytic step 2 spliceosome  post-mRNA release spliceosomal complex  
Pathways : KEGGSpliceosome   
NDEx NetworkSYF2
Atlas of Cancer Signalling NetworkSYF2
Wikipedia pathwaysSYF2
Orthology - Evolution
OrthoDB25949
GeneTree (enSembl)ENSG00000117614
Phylogenetic Trees/Animal Genes : TreeFamSYF2
HOVERGENO95926
HOGENOMO95926
Homologs : HomoloGeneSYF2
Homology/Alignments : Family Browser (UCSC)SYF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYF2
dbVarSYF2
ClinVarSYF2
1000_GenomesSYF2 
Exome Variant ServerSYF2
ExAC (Exome Aggregation Consortium)SYF2 (select the gene name)
Genetic variants : HAPMAP25949
Genomic Variants (DGV)SYF2 [DGVbeta]
DECIPHERSYF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYF2 
Mutations
ICGC Data PortalSYF2 
TCGA Data PortalSYF2 
Broad Tumor PortalSYF2
OASIS PortalSYF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYF2
DgiDB (Drug Gene Interaction Database)SYF2
DoCM (Curated mutations)SYF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYF2 (select a term)
intoGenSYF2
Cancer3DSYF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607090   
Orphanet
MedgenSYF2
Genetic Testing Registry SYF2
NextProtO95926 [Medical]
TSGene25949
GENETestsSYF2
Target ValidationSYF2
Huge Navigator SYF2 [HugePedia]
snp3D : Map Gene to Disease25949
BioCentury BCIQSYF2
ClinGenSYF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25949
Chemical/Pharm GKB GenePA142670853
Clinical trialSYF2
Miscellaneous
canSAR (ICR)SYF2 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYF2
EVEXSYF2
GoPubMedSYF2
iHOPSYF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:16:12 CEST 2017

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