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SYN2 (synapsin II)

Identity

Alias_symbol (synonym)SYNII
SYNIIa
SYNIIb
Other alias
HGNC (Hugo) SYN2
LocusID (NCBI) 6854
Atlas_Id 74407
Location 3p25.2  [Link to chromosome band 3p25]
Location_base_pair Starts at 12045834 and ends at 12227232 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AIF1L (9q34.12) / SYN2 (3p25.2)PPARG (3p25.2) / SYN2 (3p25.2)PPARG SYN2
AIF1L SYN2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYN2   11495
Cards
Entrez_Gene (NCBI)SYN2  6854  synapsin II
AliasesSYNII
GeneCards (Weizmann)SYN2
Ensembl hg19 (Hinxton)ENSG00000157152 [Gene_View]  chr3:12045834-12227232 [Contig_View]  SYN2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000157152 [Gene_View]  chr3:12045834-12227232 [Contig_View]  SYN2 [Vega]
ICGC DataPortalENSG00000157152
TCGA cBioPortalSYN2
AceView (NCBI)SYN2
Genatlas (Paris)SYN2
WikiGenes6854
SOURCE (Princeton)SYN2
Genetics Home Reference (NIH)SYN2
Genomic and cartography
GoldenPath hg19 (UCSC)SYN2  -     chr3:12045834-12227232 +  3p25.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SYN2  -     3p25.2   [Description]    (hg38-Dec_2013)
EnsemblSYN2 - 3p25.2 [CytoView hg19]  SYN2 - 3p25.2 [CytoView hg38]
Mapping of homologs : NCBISYN2 [Mapview hg19]  SYN2 [Mapview hg38]
OMIM181500   600755   
Gene and transcription
Genbank (Entrez)AB209088 AF077671 AF077737 AK091286 AK094464
RefSeq transcript (Entrez)NM_003178 NM_133625
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_011728 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)SYN2
Cluster EST : UnigeneHs.445503 [ NCBI ]
CGAP (NCI)Hs.445503
Alternative Splicing GalleryENSG00000157152
Gene ExpressionSYN2 [ NCBI-GEO ]   SYN2 [ EBI - ARRAY_EXPRESS ]   SYN2 [ SEEK ]   SYN2 [ MEM ]
Gene Expression Viewer (FireBrowse)SYN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6854
GTEX Portal (Tissue expression)SYN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92777   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92777  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92777
Splice isoforms : SwissVarQ92777
PhosPhoSitePlusQ92777
Domaine pattern : Prosite (Expaxy)SYNAPSIN_1 (PS00415)    SYNAPSIN_2 (PS00416)   
Domains : Interpro (EBI)ATP_grasp_subdomain_1    ATP_grasp_subdomain_2    PreATP-grasp_dom    Synapsin    Synapsin_ATP-bd_dom    Synapsin_CS    Synapsin_P_site    Synapsin_pre-ATP-grasp_dom   
Domain families : Pfam (Sanger)Synapsin (PF02078)    Synapsin_C (PF02750)    Synapsin_N (PF10581)   
Domain families : Pfam (NCBI)pfam02078    pfam02750    pfam10581   
Conserved Domain (NCBI)SYN2
DMDM Disease mutations6854
Blocks (Seattle)SYN2
SuperfamilyQ92777
Human Protein AtlasENSG00000157152
Peptide AtlasQ92777
HPRD02857
IPIIPI00023302   IPI00186299   IPI00967864   IPI01018698   
Protein Interaction databases
DIP (DOE-UCLA)Q92777
IntAct (EBI)Q92777
FunCoupENSG00000157152
BioGRIDSYN2
STRING (EMBL)SYN2
ZODIACSYN2
Ontologies - Pathways
QuickGOQ92777
Ontology : AmiGOcatalytic activity  ATP binding  synaptic transmission  neurotransmitter secretion  metabolic process  cell junction  synaptic vesicle membrane  synapse  
Ontology : EGO-EBIcatalytic activity  ATP binding  synaptic transmission  neurotransmitter secretion  metabolic process  cell junction  synaptic vesicle membrane  synapse  
NDEx NetworkSYN2
Atlas of Cancer Signalling NetworkSYN2
Wikipedia pathwaysSYN2
Orthology - Evolution
OrthoDB6854
GeneTree (enSembl)ENSG00000157152
Phylogenetic Trees/Animal Genes : TreeFamSYN2
HOVERGENQ92777
HOGENOMQ92777
Homologs : HomoloGeneSYN2
Homology/Alignments : Family Browser (UCSC)SYN2
Gene fusions - Rearrangements
Fusion: TCGAPPARG SYN2
Fusion: TCGAAIF1L SYN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYN2
dbVarSYN2
ClinVarSYN2
1000_GenomesSYN2 
Exome Variant ServerSYN2
ExAC (Exome Aggregation Consortium)SYN2 (select the gene name)
Genetic variants : HAPMAP6854
Genomic Variants (DGV)SYN2 [DGVbeta]
DECIPHER (Syndromes)3:12045834-12227232  ENSG00000157152
CONAN: Copy Number AnalysisSYN2 
Mutations
ICGC Data PortalSYN2 
TCGA Data PortalSYN2 
Broad Tumor PortalSYN2
OASIS PortalSYN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYN2
BioMutasearch SYN2
DgiDB (Drug Gene Interaction Database)SYN2
DoCM (Curated mutations)SYN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYN2 (select a term)
intoGenSYN2
Cancer3DSYN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM181500    600755   
Orphanet
MedgenSYN2
Genetic Testing Registry SYN2
NextProtQ92777 [Medical]
TSGene6854
GENETestsSYN2
Huge Navigator SYN2 [HugePedia]
snp3D : Map Gene to Disease6854
BioCentury BCIQSYN2
ClinGenSYN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6854
Chemical/Pharm GKB GenePA36277
Clinical trialSYN2
Miscellaneous
canSAR (ICR)SYN2 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYN2
EVEXSYN2
GoPubMedSYN2
iHOPSYN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:12 CET 2017

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