Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SYNC (syncoilin, intermediate filament protein)

Identity

Alias_namesSYNC1
syncoilin, intermediate filament 1
Alias_symbol (synonym)SYNCOILIN
Other alias
HGNC (Hugo) SYNC
LocusID (NCBI) 81493
Atlas_Id 74408
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 32679906 and ends at 32702760 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYNC   28897
Cards
Entrez_Gene (NCBI)SYNC  81493  syncoilin, intermediate filament protein
AliasesSYNC1; SYNCOILIN
GeneCards (Weizmann)SYNC
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:32679906-32702760 [Contig_View]  SYNC [Vega]
TCGA cBioPortalSYNC
AceView (NCBI)SYNC
Genatlas (Paris)SYNC
WikiGenes81493
SOURCE (Princeton)SYNC
Genetics Home Reference (NIH)SYNC
Genomic and cartography
GoldenPath hg38 (UCSC)SYNC  -     chr1:32679906-32702760 -  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYNC  -     1p35.1   [Description]    (hg19-Feb_2009)
EnsemblSYNC - 1p35.1 [CytoView hg19]  SYNC - 1p35.1 [CytoView hg38]
Mapping of homologs : NCBISYNC [Mapview hg19]  SYNC [Mapview hg38]
OMIM611750   
Gene and transcription
Genbank (Entrez)AA376455 AI752560 AK024707 AK297958 AK302275
RefSeq transcript (Entrez)NM_001161708 NM_030786
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYNC
Cluster EST : UnigeneHs.712631 [ NCBI ]
CGAP (NCI)Hs.712631
Gene ExpressionSYNC [ NCBI-GEO ]   SYNC [ EBI - ARRAY_EXPRESS ]   SYNC [ SEEK ]   SYNC [ MEM ]
Gene Expression Viewer (FireBrowse)SYNC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81493
GTEX Portal (Tissue expression)SYNC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7C4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7C4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7C4
Splice isoforms : SwissVarQ9H7C4
PhosPhoSitePlusQ9H7C4
Domains : Interpro (EBI)IF    Syncoilin   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)SYNC
DMDM Disease mutations81493
Blocks (Seattle)SYNC
SuperfamilyQ9H7C4
Peptide AtlasQ9H7C4
HPRD18134
IPIIPI00910114   IPI00952679   IPI00908594   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7C4
IntAct (EBI)Q9H7C4
BioGRIDSYNC
STRING (EMBL)SYNC
ZODIACSYNC
Ontologies - Pathways
QuickGOQ9H7C4
Ontology : AmiGOstructural molecule activity  cytosol  intermediate filament  Z disc  neuromuscular junction  sarcolemma  intermediate filament-based process  perinuclear region of cytoplasm  
Ontology : EGO-EBIstructural molecule activity  cytosol  intermediate filament  Z disc  neuromuscular junction  sarcolemma  intermediate filament-based process  perinuclear region of cytoplasm  
NDEx NetworkSYNC
Atlas of Cancer Signalling NetworkSYNC
Wikipedia pathwaysSYNC
Orthology - Evolution
OrthoDB81493
Phylogenetic Trees/Animal Genes : TreeFamSYNC
HOVERGENQ9H7C4
HOGENOMQ9H7C4
Homologs : HomoloGeneSYNC
Homology/Alignments : Family Browser (UCSC)SYNC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYNC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYNC
dbVarSYNC
ClinVarSYNC
1000_GenomesSYNC 
Exome Variant ServerSYNC
ExAC (Exome Aggregation Consortium)SYNC (select the gene name)
Genetic variants : HAPMAP81493
Genomic Variants (DGV)SYNC [DGVbeta]
DECIPHERSYNC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYNC 
Mutations
ICGC Data PortalSYNC 
TCGA Data PortalSYNC 
Broad Tumor PortalSYNC
OASIS PortalSYNC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYNC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYNC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYNC
DgiDB (Drug Gene Interaction Database)SYNC
DoCM (Curated mutations)SYNC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYNC (select a term)
intoGenSYNC
Cancer3DSYNC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611750   
Orphanet
MedgenSYNC
Genetic Testing Registry SYNC
NextProtQ9H7C4 [Medical]
TSGene81493
GENETestsSYNC
Target ValidationSYNC
Huge Navigator SYNC [HugePedia]
snp3D : Map Gene to Disease81493
BioCentury BCIQSYNC
ClinGenSYNC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81493
Chemical/Pharm GKB GenePA164726395
Clinical trialSYNC
Miscellaneous
canSAR (ICR)SYNC (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYNC
EVEXSYNC
GoPubMedSYNC
iHOPSYNC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:40:49 CEST 2017

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