Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SYNCRIP (synaptotagmin binding cytoplasmic RNA interacting protein)

Identity

Alias_symbol (synonym)NSAP1
GRY-RBP
dJ3J17.2
HNRPQ1
hnRNP-Q
HNRNPQ
Other aliasGRYRBP
PP68
HGNC (Hugo) SYNCRIP
LocusID (NCBI) 10492
Atlas_Id 56491
Location 6q14.3  [Link to chromosome band 6q14]
Location_base_pair Starts at 85607784 and ends at 85642922 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP13A1 (19p13.11) / SYNCRIP (6q14.3)EIF3M (11p13) / SYNCRIP (6q14.3)RAVER1 (19p13.2) / SYNCRIP (6q14.3)
SNX14 (6q14.3) / SYNCRIP (6q14.3)SYNCRIP (6q14.3) / CDK19 (6q21)SYNCRIP (6q14.3) / SYNCRIP (6q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYNCRIP   16918
Cards
Entrez_Gene (NCBI)SYNCRIP  10492  synaptotagmin binding cytoplasmic RNA interacting protein
AliasesGRY-RBP; GRYRBP; HNRNPQ; HNRPQ1; 
NSAP1; PP68; hnRNP-Q
GeneCards (Weizmann)SYNCRIP
Ensembl hg19 (Hinxton)ENSG00000135316 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135316 [Gene_View]  chr6:85607784-85642922 [Contig_View]  SYNCRIP [Vega]
ICGC DataPortalENSG00000135316
TCGA cBioPortalSYNCRIP
AceView (NCBI)SYNCRIP
Genatlas (Paris)SYNCRIP
WikiGenes10492
SOURCE (Princeton)SYNCRIP
Genetics Home Reference (NIH)SYNCRIP
Genomic and cartography
GoldenPath hg38 (UCSC)SYNCRIP  -     chr6:85607784-85642922 -  6q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYNCRIP  -     6q14.3   [Description]    (hg19-Feb_2009)
EnsemblSYNCRIP - 6q14.3 [CytoView hg19]  SYNCRIP - 6q14.3 [CytoView hg38]
Mapping of homologs : NCBISYNCRIP [Mapview hg19]  SYNCRIP [Mapview hg38]
OMIM616686   
Gene and transcription
Genbank (Entrez)AA411631 AB209098 AF037448 AF155568 AK056188
RefSeq transcript (Entrez)NM_001159673 NM_001159674 NM_001159675 NM_001159676 NM_001159677 NM_001253771 NM_006372
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYNCRIP
Cluster EST : UnigeneHs.571177 [ NCBI ]
CGAP (NCI)Hs.571177
Alternative Splicing GalleryENSG00000135316
Gene ExpressionSYNCRIP [ NCBI-GEO ]   SYNCRIP [ EBI - ARRAY_EXPRESS ]   SYNCRIP [ SEEK ]   SYNCRIP [ MEM ]
Gene Expression Viewer (FireBrowse)SYNCRIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10492
GTEX Portal (Tissue expression)SYNCRIP
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60506   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60506  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60506
Splice isoforms : SwissVarO60506
PhosPhoSitePlusO60506
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)HnRNP_R/Q_splicing_fac    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)SYNCRIP
DMDM Disease mutations10492
Blocks (Seattle)SYNCRIP
PDB (SRS)2DGU    2MXT    2NBB   
PDB (PDBSum)2DGU    2MXT    2NBB   
PDB (IMB)2DGU    2MXT    2NBB   
PDB (RSDB)2DGU    2MXT    2NBB   
Structural Biology KnowledgeBase2DGU    2MXT    2NBB   
SCOP (Structural Classification of Proteins)2DGU    2MXT    2NBB   
CATH (Classification of proteins structures)2DGU    2MXT    2NBB   
SuperfamilyO60506
Human Protein AtlasENSG00000135316
Peptide AtlasO60506
HPRD06734
IPIIPI00018140   IPI00402182   IPI00402183   IPI00402184   IPI00983581   IPI00402185   IPI00930205   
Protein Interaction databases
DIP (DOE-UCLA)O60506
IntAct (EBI)O60506
FunCoupENSG00000135316
BioGRIDSYNCRIP
STRING (EMBL)SYNCRIP
ZODIACSYNCRIP
Ontologies - Pathways
QuickGOO60506
Ontology : AmiGOmRNA splicing, via spliceosome  osteoblast differentiation  RNA binding  protein binding  nucleus  nucleoplasm  endoplasmic reticulum  RNA processing  poly(A) binding  RNA splicing  membrane  viral process  negative regulation of translation  negative regulation of translation  intracellular ribonucleoprotein complex  CRD-mediated mRNA stabilization  CRD-mediated mRNA stability complex  catalytic step 2 spliceosome  histone pre-mRNA 3'end processing complex  cellular response to interferon-gamma  GAIT complex  
Ontology : EGO-EBImRNA splicing, via spliceosome  osteoblast differentiation  RNA binding  protein binding  nucleus  nucleoplasm  endoplasmic reticulum  RNA processing  poly(A) binding  RNA splicing  membrane  viral process  negative regulation of translation  negative regulation of translation  intracellular ribonucleoprotein complex  CRD-mediated mRNA stabilization  CRD-mediated mRNA stability complex  catalytic step 2 spliceosome  histone pre-mRNA 3'end processing complex  cellular response to interferon-gamma  GAIT complex  
NDEx NetworkSYNCRIP
Atlas of Cancer Signalling NetworkSYNCRIP
Wikipedia pathwaysSYNCRIP
Orthology - Evolution
OrthoDB10492
GeneTree (enSembl)ENSG00000135316
Phylogenetic Trees/Animal Genes : TreeFamSYNCRIP
HOVERGENO60506
HOGENOMO60506
Homologs : HomoloGeneSYNCRIP
Homology/Alignments : Family Browser (UCSC)SYNCRIP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYNCRIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYNCRIP
dbVarSYNCRIP
ClinVarSYNCRIP
1000_GenomesSYNCRIP 
Exome Variant ServerSYNCRIP
ExAC (Exome Aggregation Consortium)SYNCRIP (select the gene name)
Genetic variants : HAPMAP10492
Genomic Variants (DGV)SYNCRIP [DGVbeta]
DECIPHERSYNCRIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYNCRIP 
Mutations
ICGC Data PortalSYNCRIP 
TCGA Data PortalSYNCRIP 
Broad Tumor PortalSYNCRIP
OASIS PortalSYNCRIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYNCRIP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYNCRIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYNCRIP
DgiDB (Drug Gene Interaction Database)SYNCRIP
DoCM (Curated mutations)SYNCRIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYNCRIP (select a term)
intoGenSYNCRIP
Cancer3DSYNCRIP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616686   
Orphanet
MedgenSYNCRIP
Genetic Testing Registry SYNCRIP
NextProtO60506 [Medical]
TSGene10492
GENETestsSYNCRIP
Huge Navigator SYNCRIP [HugePedia]
snp3D : Map Gene to Disease10492
BioCentury BCIQSYNCRIP
ClinGenSYNCRIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10492
Chemical/Pharm GKB GenePA134985065
Clinical trialSYNCRIP
Miscellaneous
canSAR (ICR)SYNCRIP (select the gene name)
Probes
Litterature
PubMed115 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYNCRIP
EVEXSYNCRIP
GoPubMedSYNCRIP
iHOPSYNCRIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:39:57 CEST 2017

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