Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SYNDIG1L (synapse differentiation inducing 1 like)

Identity

Alias_namesTMEM90A
transmembrane protein 90A
Alias_symbol (synonym)capucin
IFITMD4
Other aliasCAPUCIN
DSPC1
HGNC (Hugo) SYNDIG1L
LocusID (NCBI) 646658
Atlas_Id 74411
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 74405893 and ends at 74426102 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYNDIG1L   32388
Cards
Entrez_Gene (NCBI)SYNDIG1L  646658  synapse differentiation inducing 1 like
AliasesCAPUCIN; DSPC1; IFITMD4; TMEM90A
GeneCards (Weizmann)SYNDIG1L
Ensembl hg19 (Hinxton)ENSG00000183379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183379 [Gene_View]  chr14:74405893-74426102 [Contig_View]  SYNDIG1L [Vega]
ICGC DataPortalENSG00000183379
TCGA cBioPortalSYNDIG1L
AceView (NCBI)SYNDIG1L
Genatlas (Paris)SYNDIG1L
WikiGenes646658
SOURCE (Princeton)SYNDIG1L
Genetics Home Reference (NIH)SYNDIG1L
Genomic and cartography
GoldenPath hg38 (UCSC)SYNDIG1L  -     chr14:74405893-74426102 -  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYNDIG1L  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblSYNDIG1L - 14q24.3 [CytoView hg19]  SYNDIG1L - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBISYNDIG1L [Mapview hg19]  SYNDIG1L [Mapview hg38]
OMIM609999   
Gene and transcription
Genbank (Entrez)AK094873 BC045804 CK906042 DB173128 DB473943
RefSeq transcript (Entrez)NM_001105579
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYNDIG1L
Cluster EST : UnigeneHs.12400 [ NCBI ]
CGAP (NCI)Hs.12400
Alternative Splicing GalleryENSG00000183379
Gene ExpressionSYNDIG1L [ NCBI-GEO ]   SYNDIG1L [ EBI - ARRAY_EXPRESS ]   SYNDIG1L [ SEEK ]   SYNDIG1L [ MEM ]
Gene Expression Viewer (FireBrowse)SYNDIG1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646658
GTEX Portal (Tissue expression)SYNDIG1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDD5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDD5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDD5
Splice isoforms : SwissVarA6NDD5
PhosPhoSitePlusA6NDD5
Domains : Interpro (EBI)CD225/Dispanin_fam   
Domain families : Pfam (Sanger)CD225 (PF04505)   
Domain families : Pfam (NCBI)pfam04505   
Conserved Domain (NCBI)SYNDIG1L
DMDM Disease mutations646658
Blocks (Seattle)SYNDIG1L
SuperfamilyA6NDD5
Human Protein AtlasENSG00000183379
Peptide AtlasA6NDD5
IPIIPI00161093   IPI01025347   IPI00745468   
Protein Interaction databases
DIP (DOE-UCLA)A6NDD5
IntAct (EBI)A6NDD5
FunCoupENSG00000183379
BioGRIDSYNDIG1L
STRING (EMBL)SYNDIG1L
ZODIACSYNDIG1L
Ontologies - Pathways
QuickGOA6NDD5
Ontology : AmiGOGolgi apparatus  response to biotic stimulus  integral component of membrane  
Ontology : EGO-EBIGolgi apparatus  response to biotic stimulus  integral component of membrane  
NDEx NetworkSYNDIG1L
Atlas of Cancer Signalling NetworkSYNDIG1L
Wikipedia pathwaysSYNDIG1L
Orthology - Evolution
OrthoDB646658
GeneTree (enSembl)ENSG00000183379
Phylogenetic Trees/Animal Genes : TreeFamSYNDIG1L
HOVERGENA6NDD5
HOGENOMA6NDD5
Homologs : HomoloGeneSYNDIG1L
Homology/Alignments : Family Browser (UCSC)SYNDIG1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYNDIG1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYNDIG1L
dbVarSYNDIG1L
ClinVarSYNDIG1L
1000_GenomesSYNDIG1L 
Exome Variant ServerSYNDIG1L
ExAC (Exome Aggregation Consortium)SYNDIG1L (select the gene name)
Genetic variants : HAPMAP646658
Genomic Variants (DGV)SYNDIG1L [DGVbeta]
DECIPHERSYNDIG1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYNDIG1L 
Mutations
ICGC Data PortalSYNDIG1L 
TCGA Data PortalSYNDIG1L 
Broad Tumor PortalSYNDIG1L
OASIS PortalSYNDIG1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYNDIG1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYNDIG1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYNDIG1L
DgiDB (Drug Gene Interaction Database)SYNDIG1L
DoCM (Curated mutations)SYNDIG1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYNDIG1L (select a term)
intoGenSYNDIG1L
Cancer3DSYNDIG1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609999   
Orphanet
MedgenSYNDIG1L
Genetic Testing Registry SYNDIG1L
NextProtA6NDD5 [Medical]
TSGene646658
GENETestsSYNDIG1L
Target ValidationSYNDIG1L
Huge Navigator SYNDIG1L [HugePedia]
snp3D : Map Gene to Disease646658
BioCentury BCIQSYNDIG1L
ClinGenSYNDIG1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646658
Chemical/Pharm GKB GenePA144596263
Clinical trialSYNDIG1L
Miscellaneous
canSAR (ICR)SYNDIG1L (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYNDIG1L
EVEXSYNDIG1L
GoPubMedSYNDIG1L
iHOPSYNDIG1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:50 CEST 2017

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