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SYNDIG1L (synapse differentiation inducing 1 like)

Identity

Alias (NCBI)CAPUCIN
DSPC1
IFITMD4
TMEM90A
HGNC (Hugo) SYNDIG1L
HGNC Alias symbcapucin
IFITMD4
HGNC Alias namecaudate-and putamen-enriched sequence
 interferon induced transmembrane protein domain containing 4
HGNC Previous nameTMEM90A
HGNC Previous nametransmembrane protein 90A
LocusID (NCBI) 646658
Atlas_Id 74411
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 74405899 and ends at 74426210 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SYNDIG1L   32388
Cards
Entrez_Gene (NCBI)SYNDIG1L    synapse differentiation inducing 1 like
AliasesCAPUCIN; DSPC1; IFITMD4; TMEM90A
GeneCards (Weizmann)SYNDIG1L
Ensembl hg19 (Hinxton)ENSG00000183379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183379 [Gene_View]  ENSG00000183379 [Sequence]  chr14:74405899-74426210 [Contig_View]  SYNDIG1L [Vega]
ICGC DataPortalENSG00000183379
TCGA cBioPortalSYNDIG1L
AceView (NCBI)SYNDIG1L
Genatlas (Paris)SYNDIG1L
SOURCE (Princeton)SYNDIG1L
Genetics Home Reference (NIH)SYNDIG1L
Genomic and cartography
GoldenPath hg38 (UCSC)SYNDIG1L  -     chr14:74405899-74426210 -  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYNDIG1L  -     14q24.3   [Description]    (hg19-Feb_2009)
GoldenPathSYNDIG1L - 14q24.3 [CytoView hg19]  SYNDIG1L - 14q24.3 [CytoView hg38]
ImmunoBaseENSG00000183379
Genome Data Viewer NCBISYNDIG1L [Mapview hg19]  
OMIM609999   
Gene and transcription
Genbank (Entrez)AK094873 BC045804 CK906042 DB173128 DB473943
RefSeq transcript (Entrez)NM_001105579
Consensus coding sequences : CCDS (NCBI)SYNDIG1L
Gene ExpressionSYNDIG1L [ NCBI-GEO ]   SYNDIG1L [ EBI - ARRAY_EXPRESS ]   SYNDIG1L [ SEEK ]   SYNDIG1L [ MEM ]
Gene Expression Viewer (FireBrowse)SYNDIG1L [ Firebrowse - Broad ]
GenevisibleExpression of SYNDIG1L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646658
GTEX Portal (Tissue expression)SYNDIG1L
Human Protein AtlasENSG00000183379-SYNDIG1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDD5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDD5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDD5
PhosPhoSitePlusA6NDD5
Domains : Interpro (EBI)CD225/Dispanin_fam   
Domain families : Pfam (Sanger)CD225 (PF04505)   
Domain families : Pfam (NCBI)pfam04505   
Conserved Domain (NCBI)SYNDIG1L
SuperfamilyA6NDD5
AlphaFold pdb e-kbA6NDD5   
Human Protein Atlas [tissue]ENSG00000183379-SYNDIG1L [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A6NDD5
IntAct (EBI)A6NDD5
BioGRIDSYNDIG1L
STRING (EMBL)SYNDIG1L
ZODIACSYNDIG1L
Ontologies - Pathways
QuickGOA6NDD5
Ontology : AmiGOGolgi apparatus  membrane  integral component of membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBIGolgi apparatus  membrane  integral component of membrane  intracellular membrane-bounded organelle  
NDEx NetworkSYNDIG1L
Atlas of Cancer Signalling NetworkSYNDIG1L
Wikipedia pathwaysSYNDIG1L
Orthology - Evolution
OrthoDB646658
GeneTree (enSembl)ENSG00000183379
Phylogenetic Trees/Animal Genes : TreeFamSYNDIG1L
Homologs : HomoloGeneSYNDIG1L
Homology/Alignments : Family Browser (UCSC)SYNDIG1L
Gene fusions - Rearrangements
Fusion : QuiverSYNDIG1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYNDIG1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYNDIG1L
dbVarSYNDIG1L
ClinVarSYNDIG1L
MonarchSYNDIG1L
1000_GenomesSYNDIG1L 
Exome Variant ServerSYNDIG1L
GNOMAD BrowserENSG00000183379
Varsome BrowserSYNDIG1L
ACMGSYNDIG1L variants
VarityA6NDD5
Genomic Variants (DGV)SYNDIG1L [DGVbeta]
DECIPHERSYNDIG1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYNDIG1L 
Mutations
ICGC Data PortalSYNDIG1L 
TCGA Data PortalSYNDIG1L 
Broad Tumor PortalSYNDIG1L
OASIS PortalSYNDIG1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYNDIG1L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSYNDIG1L
Mutations and Diseases : HGMDSYNDIG1L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSYNDIG1L
DgiDB (Drug Gene Interaction Database)SYNDIG1L
DoCM (Curated mutations)SYNDIG1L
CIViC (Clinical Interpretations of Variants in Cancer)SYNDIG1L
Cancer3DSYNDIG1L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609999   
Orphanet
DisGeNETSYNDIG1L
MedgenSYNDIG1L
Genetic Testing Registry SYNDIG1L
NextProtA6NDD5 [Medical]
GENETestsSYNDIG1L
Target ValidationSYNDIG1L
Huge Navigator SYNDIG1L [HugePedia]
ClinGenSYNDIG1L
Clinical trials, drugs, therapy
MyCancerGenomeSYNDIG1L
Protein Interactions : CTDSYNDIG1L
Pharm GKB GenePA144596263
PharosA6NDD5
Clinical trialSYNDIG1L
Miscellaneous
canSAR (ICR)SYNDIG1L
HarmonizomeSYNDIG1L
DataMed IndexSYNDIG1L
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSYNDIG1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:40 CEST 2021

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