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SYNE1-AS1 (SYNE1 antisense RNA 1)

Identity

Alias_namesSYNE1 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) SYNE1-AS1
LocusID (NCBI) 100505475
Atlas_Id 74412
Location 6q25.2  [Link to chromosome band 6q25]
Location_base_pair Starts at 152380530 and ends at 152381712 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYNE1-AS1   40793
Cards
Entrez_Gene (NCBI)SYNE1-AS1  100505475  SYNE1 antisense RNA 1
Aliases
GeneCards (Weizmann)SYNE1-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:152380530-152381712 [Contig_View]  SYNE1-AS1 [Vega]
TCGA cBioPortalSYNE1-AS1
AceView (NCBI)SYNE1-AS1
Genatlas (Paris)SYNE1-AS1
WikiGenes100505475
SOURCE (Princeton)SYNE1-AS1
Genetics Home Reference (NIH)SYNE1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SYNE1-AS1  -     chr6:152380530-152381712 +  6q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYNE1-AS1  -     6q25.2   [Description]    (hg19-Feb_2009)
EnsemblSYNE1-AS1 - 6q25.2 [CytoView hg19]  SYNE1-AS1 - 6q25.2 [CytoView hg38]
Mapping of homologs : NCBISYNE1-AS1 [Mapview hg19]  SYNE1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CK821188 CK821189
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYNE1-AS1
Cluster EST : UnigeneHs.571203 [ NCBI ]
CGAP (NCI)Hs.571203
Gene ExpressionSYNE1-AS1 [ NCBI-GEO ]   SYNE1-AS1 [ EBI - ARRAY_EXPRESS ]   SYNE1-AS1 [ SEEK ]   SYNE1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SYNE1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505475
GTEX Portal (Tissue expression)SYNE1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SYNE1-AS1
DMDM Disease mutations100505475
Blocks (Seattle)SYNE1-AS1
Protein Interaction databases
BioGRIDSYNE1-AS1
STRING (EMBL)SYNE1-AS1
ZODIACSYNE1-AS1
Ontologies - Pathways
Huge Navigator SYNE1-AS1 [HugePedia]
snp3D : Map Gene to Disease100505475
BioCentury BCIQSYNE1-AS1
ClinGenSYNE1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505475
Clinical trialSYNE1-AS1
Miscellaneous
canSAR (ICR)SYNE1-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYNE1-AS1
EVEXSYNE1-AS1
GoPubMedSYNE1-AS1
iHOPSYNE1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:33:50 CEST 2018

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