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SYNE3 (spectrin repeat containing nuclear envelope family member 3)

Identity

Other aliasC14orf139
C14orf49
KASH3
LINC00341
NCRNA00341
NET53
Nesp3
HGNC (Hugo) SYNE3
LocusID (NCBI) 161176
Atlas_Id 57098
Location 14q32.13  [Link to chromosome band 14q32]
Location_base_pair Starts at 95407266 and ends at 95409688 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM19A5 (22q13.32) / SYNE3 (14q32.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYNE3   19861
Cards
Entrez_Gene (NCBI)SYNE3  161176  spectrin repeat containing nuclear envelope family member 3
AliasesC14orf139; C14orf49; KASH3; LINC00341; 
NCRNA00341; NET53; Nesp3
GeneCards (Weizmann)SYNE3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:95407266-95409688 [Contig_View]  SYNE3 [Vega]
TCGA cBioPortalSYNE3
AceView (NCBI)SYNE3
Genatlas (Paris)SYNE3
WikiGenes161176
SOURCE (Princeton)SYNE3
Genetics Home Reference (NIH)SYNE3
Genomic and cartography
GoldenPath hg38 (UCSC)SYNE3  -     chr14:95407266-95409688 -  14q32.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYNE3  -     14q32.13   [Description]    (hg19-Feb_2009)
EnsemblSYNE3 - 14q32.13 [CytoView hg19]  SYNE3 - 14q32.13 [CytoView hg38]
Mapping of homologs : NCBISYNE3 [Mapview hg19]  SYNE3 [Mapview hg38]
OMIM610861   
Gene and transcription
Genbank (Entrez)AK024929 AK098471 AK131436 BC008299 BC061899
RefSeq transcript (Entrez)NM_024633 NM_152592
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYNE3
Cluster EST : UnigeneHs.354645 [ NCBI ]
CGAP (NCI)Hs.354645
Gene ExpressionSYNE3 [ NCBI-GEO ]   SYNE3 [ EBI - ARRAY_EXPRESS ]   SYNE3 [ SEEK ]   SYNE3 [ MEM ]
Gene Expression Viewer (FireBrowse)SYNE3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161176
GTEX Portal (Tissue expression)SYNE3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMZ3
Splice isoforms : SwissVarQ6ZMZ3
PhosPhoSitePlusQ6ZMZ3
Domaine pattern : Prosite (Expaxy)KASH (PS51049)   
Domains : Interpro (EBI)KASH    Spectrin/alpha-actinin    Spectrin_repeat   
Domain families : Pfam (Sanger)KASH (PF10541)    Spectrin (PF00435)   
Domain families : Pfam (NCBI)pfam10541    pfam00435   
Domain families : Smart (EMBL)KASH (SM01249)  SPEC (SM00150)  
Conserved Domain (NCBI)SYNE3
DMDM Disease mutations161176
Blocks (Seattle)SYNE3
SuperfamilyQ6ZMZ3
Peptide AtlasQ6ZMZ3
IPIIPI00394994   IPI00829842   IPI00830100   IPI00441296   IPI01025192   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMZ3
IntAct (EBI)Q6ZMZ3
BioGRIDSYNE3
STRING (EMBL)SYNE3
ZODIACSYNE3
Ontologies - Pathways
QuickGOQ6ZMZ3
Ontology : AmiGOprotein binding  nuclear envelope  nuclear outer membrane  rough endoplasmic reticulum  cytoskeleton organization  regulation of cell shape  membrane  integral component of membrane  nuclear membrane  LINC complex  actin filament binding  establishment of protein localization to membrane  cytoskeletal anchoring at nuclear membrane  
Ontology : EGO-EBIprotein binding  nuclear envelope  nuclear outer membrane  rough endoplasmic reticulum  cytoskeleton organization  regulation of cell shape  membrane  integral component of membrane  nuclear membrane  LINC complex  actin filament binding  establishment of protein localization to membrane  cytoskeletal anchoring at nuclear membrane  
NDEx NetworkSYNE3
Atlas of Cancer Signalling NetworkSYNE3
Wikipedia pathwaysSYNE3
Orthology - Evolution
OrthoDB161176
Phylogenetic Trees/Animal Genes : TreeFamSYNE3
HOVERGENQ6ZMZ3
HOGENOMQ6ZMZ3
Homologs : HomoloGeneSYNE3
Homology/Alignments : Family Browser (UCSC)SYNE3
Gene fusions - Rearrangements
Tumor Fusion PortalSYNE3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYNE3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYNE3
dbVarSYNE3
ClinVarSYNE3
1000_GenomesSYNE3 
Exome Variant ServerSYNE3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP161176
Genomic Variants (DGV)SYNE3 [DGVbeta]
DECIPHERSYNE3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYNE3 
Mutations
ICGC Data PortalSYNE3 
TCGA Data PortalSYNE3 
Broad Tumor PortalSYNE3
OASIS PortalSYNE3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYNE3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYNE3
BioMutasearch SYNE3
DgiDB (Drug Gene Interaction Database)SYNE3
DoCM (Curated mutations)SYNE3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYNE3 (select a term)
intoGenSYNE3
Cancer3DSYNE3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610861   
Orphanet
DisGeNETSYNE3
MedgenSYNE3
Genetic Testing Registry SYNE3
NextProtQ6ZMZ3 [Medical]
TSGene161176
GENETestsSYNE3
Target ValidationSYNE3
Huge Navigator SYNE3 [HugePedia]
snp3D : Map Gene to Disease161176
BioCentury BCIQSYNE3
ClinGenSYNE3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161176
Chemical/Pharm GKB GenePA134931380
Clinical trialSYNE3
Miscellaneous
canSAR (ICR)SYNE3 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYNE3
EVEXSYNE3
GoPubMedSYNE3
iHOPSYNE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:37:24 CET 2017

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