Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SYNGR1 (synaptogyrin 1)

Identity

Other alias-
HGNC (Hugo) SYNGR1
LocusID (NCBI) 9145
Atlas_Id 74415
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 39349949 and ends at 39385588 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM59L (19p13.11) / SYNGR1 (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYNGR1   11498
Cards
Entrez_Gene (NCBI)SYNGR1  9145  synaptogyrin 1
Aliases
GeneCards (Weizmann)SYNGR1
Ensembl hg19 (Hinxton)ENSG00000100321 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100321 [Gene_View]  chr22:39349949-39385588 [Contig_View]  SYNGR1 [Vega]
ICGC DataPortalENSG00000100321
TCGA cBioPortalSYNGR1
AceView (NCBI)SYNGR1
Genatlas (Paris)SYNGR1
WikiGenes9145
SOURCE (Princeton)SYNGR1
Genetics Home Reference (NIH)SYNGR1
Genomic and cartography
GoldenPath hg38 (UCSC)SYNGR1  -     chr22:39349949-39385588 +  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYNGR1  -     22q13.1   [Description]    (hg19-Feb_2009)
EnsemblSYNGR1 - 22q13.1 [CytoView hg19]  SYNGR1 - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBISYNGR1 [Mapview hg19]  SYNGR1 [Mapview hg38]
OMIM603925   
Gene and transcription
Genbank (Entrez)AA412350 AI278583 AJ002303 AJ002304 AJ002305
RefSeq transcript (Entrez)NM_004711 NM_145731 NM_145738
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYNGR1
Cluster EST : UnigeneHs.216226 [ NCBI ]
CGAP (NCI)Hs.216226
Alternative Splicing GalleryENSG00000100321
Gene ExpressionSYNGR1 [ NCBI-GEO ]   SYNGR1 [ EBI - ARRAY_EXPRESS ]   SYNGR1 [ SEEK ]   SYNGR1 [ MEM ]
Gene Expression Viewer (FireBrowse)SYNGR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9145
GTEX Portal (Tissue expression)SYNGR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43759   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43759  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43759
Splice isoforms : SwissVarO43759
PhosPhoSitePlusO43759
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel    Synaptogyrin   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)SYNGR1
DMDM Disease mutations9145
Blocks (Seattle)SYNGR1
SuperfamilyO43759
Human Protein AtlasENSG00000100321
Peptide AtlasO43759
HPRD06800
IPIIPI00013940   IPI00178631   IPI00745347   IPI00796478   IPI00879771   IPI00878220   
Protein Interaction databases
DIP (DOE-UCLA)O43759
IntAct (EBI)O43759
FunCoupENSG00000100321
BioGRIDSYNGR1
STRING (EMBL)SYNGR1
ZODIACSYNGR1
Ontologies - Pathways
QuickGOO43759
Ontology : AmiGOprotein binding  plasma membrane  protein targeting  synaptic vesicle  integral component of membrane  cell junction  synaptic vesicle membrane  neuromuscular junction  azurophil granule membrane  melanosome  terminal bouton  neutrophil degranulation  regulation of long-term neuronal synaptic plasticity  regulation of short-term neuronal synaptic plasticity  
Ontology : EGO-EBIprotein binding  plasma membrane  protein targeting  synaptic vesicle  integral component of membrane  cell junction  synaptic vesicle membrane  neuromuscular junction  azurophil granule membrane  melanosome  terminal bouton  neutrophil degranulation  regulation of long-term neuronal synaptic plasticity  regulation of short-term neuronal synaptic plasticity  
NDEx NetworkSYNGR1
Atlas of Cancer Signalling NetworkSYNGR1
Wikipedia pathwaysSYNGR1
Orthology - Evolution
OrthoDB9145
GeneTree (enSembl)ENSG00000100321
Phylogenetic Trees/Animal Genes : TreeFamSYNGR1
HOVERGENO43759
HOGENOMO43759
Homologs : HomoloGeneSYNGR1
Homology/Alignments : Family Browser (UCSC)SYNGR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYNGR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYNGR1
dbVarSYNGR1
ClinVarSYNGR1
1000_GenomesSYNGR1 
Exome Variant ServerSYNGR1
ExAC (Exome Aggregation Consortium)SYNGR1 (select the gene name)
Genetic variants : HAPMAP9145
Genomic Variants (DGV)SYNGR1 [DGVbeta]
DECIPHERSYNGR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYNGR1 
Mutations
ICGC Data PortalSYNGR1 
TCGA Data PortalSYNGR1 
Broad Tumor PortalSYNGR1
OASIS PortalSYNGR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYNGR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYNGR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYNGR1
DgiDB (Drug Gene Interaction Database)SYNGR1
DoCM (Curated mutations)SYNGR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYNGR1 (select a term)
intoGenSYNGR1
Cancer3DSYNGR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603925   
Orphanet
MedgenSYNGR1
Genetic Testing Registry SYNGR1
NextProtO43759 [Medical]
TSGene9145
GENETestsSYNGR1
Target ValidationSYNGR1
Huge Navigator SYNGR1 [HugePedia]
snp3D : Map Gene to Disease9145
BioCentury BCIQSYNGR1
ClinGenSYNGR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9145
Chemical/Pharm GKB GenePA36280
Clinical trialSYNGR1
Miscellaneous
canSAR (ICR)SYNGR1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYNGR1
EVEXSYNGR1
GoPubMedSYNGR1
iHOPSYNGR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:44:40 CEST 2017

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