Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SYNGR2 (synaptogyrin 2)

Identity

Other alias-
HGNC (Hugo) SYNGR2
LocusID (NCBI) 9144
Atlas_Id 74416
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 78168545 and ends at 78172928 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AFMID (17q25.3) / SYNGR2 (17q25.3)SYNGR2 (17q25.3) / MSI2 (17q22)SYNGR2 (17q25.3) / TRIOBP (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYNGR2   11499
Cards
Entrez_Gene (NCBI)SYNGR2  9144  synaptogyrin 2
Aliases
GeneCards (Weizmann)SYNGR2
Ensembl hg19 (Hinxton)ENSG00000108639 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108639 [Gene_View]  chr17:78168545-78172928 [Contig_View]  SYNGR2 [Vega]
ICGC DataPortalENSG00000108639
TCGA cBioPortalSYNGR2
AceView (NCBI)SYNGR2
Genatlas (Paris)SYNGR2
WikiGenes9144
SOURCE (Princeton)SYNGR2
Genetics Home Reference (NIH)SYNGR2
Genomic and cartography
GoldenPath hg38 (UCSC)SYNGR2  -     chr17:78168545-78172928 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYNGR2  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblSYNGR2 - 17q25.3 [CytoView hg19]  SYNGR2 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBISYNGR2 [Mapview hg19]  SYNGR2 [Mapview hg38]
OMIM603926   
Gene and transcription
Genbank (Entrez)AJ002308 AL833010 AY358916 BC000407 BC029755
RefSeq transcript (Entrez)NM_001320523 NM_004710
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYNGR2
Cluster EST : UnigeneHs.708616 [ NCBI ]
CGAP (NCI)Hs.708616
Alternative Splicing GalleryENSG00000108639
Gene ExpressionSYNGR2 [ NCBI-GEO ]   SYNGR2 [ EBI - ARRAY_EXPRESS ]   SYNGR2 [ SEEK ]   SYNGR2 [ MEM ]
Gene Expression Viewer (FireBrowse)SYNGR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9144
GTEX Portal (Tissue expression)SYNGR2
Human Protein AtlasENSG00000108639-SYNGR2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43760   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43760  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43760
Splice isoforms : SwissVarO43760
PhosPhoSitePlusO43760
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel    Synaptogyrin   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)SYNGR2
DMDM Disease mutations9144
Blocks (Seattle)SYNGR2
SuperfamilyO43760
Human Protein Atlas [tissue]ENSG00000108639-SYNGR2 [tissue]
Peptide AtlasO43760
HPRD04891
IPIIPI00013946   IPI00654744   
Protein Interaction databases
DIP (DOE-UCLA)O43760
IntAct (EBI)O43760
FunCoupENSG00000108639
BioGRIDSYNGR2
STRING (EMBL)SYNGR2
ZODIACSYNGR2
Ontologies - Pathways
QuickGOO43760
Ontology : AmiGOprotein binding  synaptic vesicle  integral component of membrane  synaptic vesicle membrane  neuromuscular junction  extracellular exosome  
Ontology : EGO-EBIprotein binding  synaptic vesicle  integral component of membrane  synaptic vesicle membrane  neuromuscular junction  extracellular exosome  
NDEx NetworkSYNGR2
Atlas of Cancer Signalling NetworkSYNGR2
Wikipedia pathwaysSYNGR2
Orthology - Evolution
OrthoDB9144
GeneTree (enSembl)ENSG00000108639
Phylogenetic Trees/Animal Genes : TreeFamSYNGR2
HOVERGENO43760
HOGENOMO43760
Homologs : HomoloGeneSYNGR2
Homology/Alignments : Family Browser (UCSC)SYNGR2
Gene fusions - Rearrangements
Fusion: Tumor Portal SYNGR2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYNGR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYNGR2
dbVarSYNGR2
ClinVarSYNGR2
1000_GenomesSYNGR2 
Exome Variant ServerSYNGR2
ExAC (Exome Aggregation Consortium)ENSG00000108639
GNOMAD BrowserENSG00000108639
Genetic variants : HAPMAP9144
Genomic Variants (DGV)SYNGR2 [DGVbeta]
DECIPHERSYNGR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYNGR2 
Mutations
ICGC Data PortalSYNGR2 
TCGA Data PortalSYNGR2 
Broad Tumor PortalSYNGR2
OASIS PortalSYNGR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYNGR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYNGR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYNGR2
DgiDB (Drug Gene Interaction Database)SYNGR2
DoCM (Curated mutations)SYNGR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYNGR2 (select a term)
intoGenSYNGR2
Cancer3DSYNGR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603926   
Orphanet
MedgenSYNGR2
Genetic Testing Registry SYNGR2
NextProtO43760 [Medical]
TSGene9144
GENETestsSYNGR2
Target ValidationSYNGR2
Huge Navigator SYNGR2 [HugePedia]
snp3D : Map Gene to Disease9144
BioCentury BCIQSYNGR2
ClinGenSYNGR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9144
Chemical/Pharm GKB GenePA36281
Clinical trialSYNGR2
Miscellaneous
canSAR (ICR)SYNGR2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYNGR2
EVEXSYNGR2
GoPubMedSYNGR2
iHOPSYNGR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:31:31 CET 2017

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