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SYNGR3 (synaptogyrin 3)

Identity

Other alias-
HGNC (Hugo) SYNGR3
LocusID (NCBI) 9143
Atlas_Id 74417
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1989945 and ends at 1994275 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TSC2 (16p13.3) / SYNGR3 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYNGR3   11501
Cards
Entrez_Gene (NCBI)SYNGR3  9143  synaptogyrin 3
Aliases
GeneCards (Weizmann)SYNGR3
Ensembl hg19 (Hinxton)ENSG00000127561 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127561 [Gene_View]  chr16:1989945-1994275 [Contig_View]  SYNGR3 [Vega]
ICGC DataPortalENSG00000127561
TCGA cBioPortalSYNGR3
AceView (NCBI)SYNGR3
Genatlas (Paris)SYNGR3
WikiGenes9143
SOURCE (Princeton)SYNGR3
Genetics Home Reference (NIH)SYNGR3
Genomic and cartography
GoldenPath hg38 (UCSC)SYNGR3  -     chr16:1989945-1994275 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYNGR3  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblSYNGR3 - 16p13.3 [CytoView hg19]  SYNGR3 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBISYNGR3 [Mapview hg19]  SYNGR3 [Mapview hg38]
OMIM603927   
Gene and transcription
Genbank (Entrez)AJ002309 AK313894 BC009568 BC014087 BG699055
RefSeq transcript (Entrez)NM_004209
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYNGR3
Cluster EST : UnigeneHs.435277 [ NCBI ]
CGAP (NCI)Hs.435277
Alternative Splicing GalleryENSG00000127561
Gene ExpressionSYNGR3 [ NCBI-GEO ]   SYNGR3 [ EBI - ARRAY_EXPRESS ]   SYNGR3 [ SEEK ]   SYNGR3 [ MEM ]
Gene Expression Viewer (FireBrowse)SYNGR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9143
GTEX Portal (Tissue expression)SYNGR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43761   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43761  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43761
Splice isoforms : SwissVarO43761
PhosPhoSitePlusO43761
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel    Synaptogyrin   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)SYNGR3
DMDM Disease mutations9143
Blocks (Seattle)SYNGR3
SuperfamilyO43761
Human Protein AtlasENSG00000127561
Peptide AtlasO43761
HPRD06801
IPIIPI00013947   IPI00186845   
Protein Interaction databases
DIP (DOE-UCLA)O43761
IntAct (EBI)O43761
FunCoupENSG00000127561
BioGRIDSYNGR3
STRING (EMBL)SYNGR3
ZODIACSYNGR3
Ontologies - Pathways
QuickGOO43761
Ontology : AmiGOsynaptic vesicle  integral component of membrane  substantia nigra development  cell junction  synaptic vesicle membrane  neuromuscular junction  positive regulation of transporter activity  SH2 domain binding  protein N-terminus binding  
Ontology : EGO-EBIsynaptic vesicle  integral component of membrane  substantia nigra development  cell junction  synaptic vesicle membrane  neuromuscular junction  positive regulation of transporter activity  SH2 domain binding  protein N-terminus binding  
NDEx NetworkSYNGR3
Atlas of Cancer Signalling NetworkSYNGR3
Wikipedia pathwaysSYNGR3
Orthology - Evolution
OrthoDB9143
GeneTree (enSembl)ENSG00000127561
Phylogenetic Trees/Animal Genes : TreeFamSYNGR3
HOVERGENO43761
HOGENOMO43761
Homologs : HomoloGeneSYNGR3
Homology/Alignments : Family Browser (UCSC)SYNGR3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYNGR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYNGR3
dbVarSYNGR3
ClinVarSYNGR3
1000_GenomesSYNGR3 
Exome Variant ServerSYNGR3
ExAC (Exome Aggregation Consortium)SYNGR3 (select the gene name)
Genetic variants : HAPMAP9143
Genomic Variants (DGV)SYNGR3 [DGVbeta]
DECIPHERSYNGR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYNGR3 
Mutations
ICGC Data PortalSYNGR3 
TCGA Data PortalSYNGR3 
Broad Tumor PortalSYNGR3
OASIS PortalSYNGR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYNGR3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYNGR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYNGR3
DgiDB (Drug Gene Interaction Database)SYNGR3
DoCM (Curated mutations)SYNGR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYNGR3 (select a term)
intoGenSYNGR3
Cancer3DSYNGR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603927   
Orphanet
MedgenSYNGR3
Genetic Testing Registry SYNGR3
NextProtO43761 [Medical]
TSGene9143
GENETestsSYNGR3
Target ValidationSYNGR3
Huge Navigator SYNGR3 [HugePedia]
snp3D : Map Gene to Disease9143
BioCentury BCIQSYNGR3
ClinGenSYNGR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9143
Chemical/Pharm GKB GenePA36283
Clinical trialSYNGR3
Miscellaneous
canSAR (ICR)SYNGR3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYNGR3
EVEXSYNGR3
GoPubMedSYNGR3
iHOPSYNGR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:44:40 CEST 2017

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