Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SYNGR4 (synaptogyrin 4)

Identity

Alias (NCBI)-
HGNC (Hugo) SYNGR4
LocusID (NCBI) 23546
Atlas_Id 74418
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48364394 and ends at 48376377 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SYNGR4   11502
Cards
Entrez_Gene (NCBI)SYNGR4    synaptogyrin 4
Aliases
GeneCards (Weizmann)SYNGR4
Ensembl hg19 (Hinxton)ENSG00000105467 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105467 [Gene_View]  ENSG00000105467 [Sequence]  chr19:48364394-48376377 [Contig_View]  SYNGR4 [Vega]
ICGC DataPortalENSG00000105467
TCGA cBioPortalSYNGR4
AceView (NCBI)SYNGR4
Genatlas (Paris)SYNGR4
SOURCE (Princeton)SYNGR4
Genetics Home Reference (NIH)SYNGR4
Genomic and cartography
GoldenPath hg38 (UCSC)SYNGR4  -     chr19:48364394-48376377 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYNGR4  -     19q13.33   [Description]    (hg19-Feb_2009)
GoldenPathSYNGR4 - 19q13.33 [CytoView hg19]  SYNGR4 - 19q13.33 [CytoView hg38]
ImmunoBaseENSG00000105467
genome Data Viewer NCBISYNGR4 [Mapview hg19]  
OMIM608373   
Gene and transcription
Genbank (Entrez)AI222412 AJ011733 BC106891 BG720827 HM005695
RefSeq transcript (Entrez)NM_012451
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYNGR4
Alternative Splicing GalleryENSG00000105467
Gene ExpressionSYNGR4 [ NCBI-GEO ]   SYNGR4 [ EBI - ARRAY_EXPRESS ]   SYNGR4 [ SEEK ]   SYNGR4 [ MEM ]
Gene Expression Viewer (FireBrowse)SYNGR4 [ Firebrowse - Broad ]
GenevisibleExpression of SYNGR4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23546
GTEX Portal (Tissue expression)SYNGR4
Human Protein AtlasENSG00000105467-SYNGR4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95473   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95473  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95473
Splice isoforms : SwissVarO95473
PhosPhoSitePlusO95473
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel    Synaptogyrin   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)SYNGR4
Blocks (Seattle)SYNGR4
SuperfamilyO95473
Human Protein Atlas [tissue]ENSG00000105467-SYNGR4 [tissue]
Peptide AtlasO95473
HPRD10520
IPIIPI00294757   
Protein Interaction databases
DIP (DOE-UCLA)O95473
IntAct (EBI)O95473
BioGRIDSYNGR4
STRING (EMBL)SYNGR4
ZODIACSYNGR4
Ontologies - Pathways
QuickGOO95473
Ontology : AmiGOintegral component of membrane  synaptic vesicle membrane  neuromuscular junction  
Ontology : EGO-EBIintegral component of membrane  synaptic vesicle membrane  neuromuscular junction  
NDEx NetworkSYNGR4
Atlas of Cancer Signalling NetworkSYNGR4
Wikipedia pathwaysSYNGR4
Orthology - Evolution
OrthoDB23546
GeneTree (enSembl)ENSG00000105467
Phylogenetic Trees/Animal Genes : TreeFamSYNGR4
HOGENOMO95473
Homologs : HomoloGeneSYNGR4
Homology/Alignments : Family Browser (UCSC)SYNGR4
Gene fusions - Rearrangements
Fusion : QuiverSYNGR4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYNGR4 [hg38]
dbVarSYNGR4
ClinVarSYNGR4
MonarchSYNGR4
1000_GenomesSYNGR4 
Exome Variant ServerSYNGR4
GNOMAD BrowserENSG00000105467
Varsome BrowserSYNGR4
Genomic Variants (DGV)SYNGR4 [DGVbeta]
DECIPHERSYNGR4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYNGR4 
Mutations
ICGC Data PortalSYNGR4 
TCGA Data PortalSYNGR4 
Broad Tumor PortalSYNGR4
OASIS PortalSYNGR4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYNGR4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSYNGR4
Mutations and Diseases : HGMDSYNGR4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYNGR4
DgiDB (Drug Gene Interaction Database)SYNGR4
DoCM (Curated mutations)SYNGR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYNGR4 (select a term)
intoGenSYNGR4
Cancer3DSYNGR4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608373   
Orphanet
DisGeNETSYNGR4
MedgenSYNGR4
Genetic Testing Registry SYNGR4
NextProtO95473 [Medical]
GENETestsSYNGR4
Target ValidationSYNGR4
Huge Navigator SYNGR4 [HugePedia]
ClinGenSYNGR4
Clinical trials, drugs, therapy
MyCancerGenomeSYNGR4
Protein Interactions : CTD
Pharm GKB GenePA36284
Clinical trialSYNGR4
Miscellaneous
canSAR (ICR)SYNGR4 (select the gene name)
HarmonizomeSYNGR4
DataMed IndexSYNGR4
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYNGR4
EVEXSYNGR4
GoPubMedSYNGR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:30:54 CET 2020

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