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SYNGR4 (synaptogyrin 4)

Identity

Other alias-
HGNC (Hugo) SYNGR4
LocusID (NCBI) 23546
Atlas_Id 74418
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48364394 and ends at 48376377 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SYNGR4   11502
Cards
Entrez_Gene (NCBI)SYNGR4  23546  synaptogyrin 4
Aliases
GeneCards (Weizmann)SYNGR4
Ensembl hg19 (Hinxton)ENSG00000105467 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105467 [Gene_View]  chr19:48364394-48376377 [Contig_View]  SYNGR4 [Vega]
ICGC DataPortalENSG00000105467
TCGA cBioPortalSYNGR4
AceView (NCBI)SYNGR4
Genatlas (Paris)SYNGR4
WikiGenes23546
SOURCE (Princeton)SYNGR4
Genetics Home Reference (NIH)SYNGR4
Genomic and cartography
GoldenPath hg38 (UCSC)SYNGR4  -     chr19:48364394-48376377 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SYNGR4  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblSYNGR4 - 19q13.33 [CytoView hg19]  SYNGR4 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBISYNGR4 [Mapview hg19]  SYNGR4 [Mapview hg38]
OMIM608373   
Gene and transcription
Genbank (Entrez)AI222412 AJ011733 BC106891 BG720827 HM005695
RefSeq transcript (Entrez)NM_012451
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SYNGR4
Cluster EST : UnigeneHs.408333 [ NCBI ]
CGAP (NCI)Hs.408333
Alternative Splicing GalleryENSG00000105467
Gene ExpressionSYNGR4 [ NCBI-GEO ]   SYNGR4 [ EBI - ARRAY_EXPRESS ]   SYNGR4 [ SEEK ]   SYNGR4 [ MEM ]
Gene Expression Viewer (FireBrowse)SYNGR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23546
GTEX Portal (Tissue expression)SYNGR4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95473   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95473  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95473
Splice isoforms : SwissVarO95473
PhosPhoSitePlusO95473
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel    Synaptogyrin   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)SYNGR4
DMDM Disease mutations23546
Blocks (Seattle)SYNGR4
SuperfamilyO95473
Human Protein AtlasENSG00000105467
Peptide AtlasO95473
HPRD10520
IPIIPI00294757   
Protein Interaction databases
DIP (DOE-UCLA)O95473
IntAct (EBI)O95473
FunCoupENSG00000105467
BioGRIDSYNGR4
STRING (EMBL)SYNGR4
ZODIACSYNGR4
Ontologies - Pathways
QuickGOO95473
Ontology : AmiGOintegral component of membrane  synaptic vesicle membrane  neuromuscular junction  
Ontology : EGO-EBIintegral component of membrane  synaptic vesicle membrane  neuromuscular junction  
NDEx NetworkSYNGR4
Atlas of Cancer Signalling NetworkSYNGR4
Wikipedia pathwaysSYNGR4
Orthology - Evolution
OrthoDB23546
GeneTree (enSembl)ENSG00000105467
Phylogenetic Trees/Animal Genes : TreeFamSYNGR4
HOVERGENO95473
HOGENOMO95473
Homologs : HomoloGeneSYNGR4
Homology/Alignments : Family Browser (UCSC)SYNGR4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSYNGR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SYNGR4
dbVarSYNGR4
ClinVarSYNGR4
1000_GenomesSYNGR4 
Exome Variant ServerSYNGR4
ExAC (Exome Aggregation Consortium)SYNGR4 (select the gene name)
Genetic variants : HAPMAP23546
Genomic Variants (DGV)SYNGR4 [DGVbeta]
DECIPHERSYNGR4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSYNGR4 
Mutations
ICGC Data PortalSYNGR4 
TCGA Data PortalSYNGR4 
Broad Tumor PortalSYNGR4
OASIS PortalSYNGR4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSYNGR4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSYNGR4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SYNGR4
DgiDB (Drug Gene Interaction Database)SYNGR4
DoCM (Curated mutations)SYNGR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SYNGR4 (select a term)
intoGenSYNGR4
Cancer3DSYNGR4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608373   
Orphanet
MedgenSYNGR4
Genetic Testing Registry SYNGR4
NextProtO95473 [Medical]
TSGene23546
GENETestsSYNGR4
Huge Navigator SYNGR4 [HugePedia]
snp3D : Map Gene to Disease23546
BioCentury BCIQSYNGR4
ClinGenSYNGR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23546
Chemical/Pharm GKB GenePA36284
Clinical trialSYNGR4
Miscellaneous
canSAR (ICR)SYNGR4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSYNGR4
EVEXSYNGR4
GoPubMedSYNGR4
iHOPSYNGR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:57:10 CEST 2017

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